TnSeqCorr

Top 10 genes with highest correlation to Rv0414c/thiE:

update plotcorrelationlink to info on gene
Rv3527/- (cc=0.44) info on Rv3527/-
Rv0427c/xthA (cc=0.4275) info on Rv0427c/xthA
Rv0553/menC (cc=0.4155) info on Rv0553/menC
Rv1711/- (cc=0.4093) info on Rv1711/-
Rv1717/- (cc=0.4041) info on Rv1717/-
Rv0581/vapB26 (cc=0.3926) info on Rv0581/vapB26
Rv1982A/vapB36 (cc=0.3816) info on Rv1982A/vapB36
Rv1149/- (cc=0.3716) info on Rv1149/-
Rv3039c/echA17 (cc=0.3698) info on Rv3039c/echA17
Rv2494/vapC38 (cc=0.3632) info on Rv2494/vapC38

Correlation of Rv0414c/thiE with Rv2494/vapC38

Normalized LFCs for Rv0414c/thiE:
(description and provenance of datasets)
Rv0414c/thiERv2494/vapC38
Fe_supp_jason_reseq

0.923

-0.172

low_pH_jason_reseq

-0.811

-0.44

NO_jason_reseq

0.0

-0.373

B6_jason_reseq

-0.538

-1.759

MHCII_jason_reseq

-0.105

0.999

Isoniazid02

0.604

0.102

Rifampicin4

1.362

0.753

Ethambutol3

0.27

-0.17

Meropenem3

0.386

0.024

Vancomycin16

0.0

0.459

Rv2680_day32

0.0

-1.831

H37Rv_KO_MarP

0.299

0.183

hypoxia_3wks

-0.327

-0.219

hypoxia_6wks

3.197

2.218

glycerol

1.147

0.591

cholesterol

1.577

-0.808

AJ

1.239

-1.662

Bibs02

-1.123

-0.564

Bibs02c

1.801

-0.782

BL6

0.0

0.29

BL6a

2.197

-0.653

BXD01

0.334

-2.331

BXD010

1.256

-0.342

BXD011

-0.157

-1.2

BXD03

-0.258

0.262

BXD04

0.317

-1.317

BXD05

1.67

0.207

BXD06

0.713

-0.836

BXD07

0.355

-0.648

BXD08

0.614

-0.673

BXD09

0.798

-0.091

CAST

-0.606

-1.411

CCcont

-0.089

-0.773

DS01

-0.45

0.055

DS02

-1.336

-0.331

DS04

2.867

-0.932

DS0c

-1.332

0.596

GP01

-0.607

-0.089

GP02

-0.428

-1.565

GP0c

-0.799

-0.912

NOD

-0.428

-0.425

NZO

0.512

-1.338

PWK

-0.666

-0.733

H37Rv_KO_CtpC

0.81

0.215

H37Rv_KO_CtpD

-0.651

-1.624

H37Rv_KO_Rv1272

-0.598

0.494

H37Rv_KO_SugABC

-0.608

-0.664

H37Rv_KO_MbtN

-0.061

-0.84

Trans05

-0.672

-2.892

macrophage_unactivated

-1.644

-1.944

IL1

0.252

-1.148

Rapamycin

-0.276

-1.157

Tcell

-0.945

0.743

GMCSF

0.636

-1.505

IFNab

0.381

-1.264

IFNg

0.837

-0.323

IFNg_GMCSF1

-1.26

-1.442

Rv1432_day32

0.0

-0.198

Rv1565c_day32

0.0

0.0

secA2_input

-1.234

0.272

delta_Rv3594

0.268

-0.459

delta_Rv3717

-0.39

-0.331

delta_Rv3811

0.437

-1.157

delta_Rv0954

-1.233

-0.34

PonA1

-1.884

-0.434

EccD1_KO

1.635

1.589

EspI_KO

2.199

0.488

PE35_KO

1.272

1.692

PPE68_KO

0.512

1.145

glycerol2

-1.073

-3.171

lignocerate

-0.613

-1.292

oleate

-1.086

-2.836

phosphatidylcholine

-1.073

-2.801

acetate

-1.044

-1.38

glucAc

0.451

-0.514

Rv0950ko

1.122

-1.402

Rv1096ko

0.92

-1.402

Rv3684ko

3.134

0.724

delta_otsA_trehalose

0.0

1.047