TnSeqCorr

Top 10 genes with highest correlation to Rv0414c/thiE:

update plotcorrelationlink to info on gene
Rv3527/- (cc=0.44) info on Rv3527/-
Rv0427c/xthA (cc=0.4275) info on Rv0427c/xthA
Rv0553/menC (cc=0.4155) info on Rv0553/menC
Rv1711/- (cc=0.4093) info on Rv1711/-
Rv1717/- (cc=0.4041) info on Rv1717/-
Rv0581/vapB26 (cc=0.3926) info on Rv0581/vapB26
Rv1982A/vapB36 (cc=0.3816) info on Rv1982A/vapB36
Rv1149/- (cc=0.3716) info on Rv1149/-
Rv3039c/echA17 (cc=0.3698) info on Rv3039c/echA17
Rv2494/vapC38 (cc=0.3632) info on Rv2494/vapC38

Correlation of Rv0414c/thiE with Rv3527/-

Normalized LFCs for Rv0414c/thiE:
(description and provenance of datasets)
Rv0414c/thiERv3527/-
Fe_supp_jason_reseq

0.923

-0.24

low_pH_jason_reseq

-0.811

-1.989

NO_jason_reseq

0.0

-1.352

B6_jason_reseq

-0.538

-2.055

MHCII_jason_reseq

-0.105

-1.933

Isoniazid02

0.604

-0.239

Rifampicin4

1.362

0.812

Ethambutol3

0.27

0.275

Meropenem3

0.386

0.423

Vancomycin16

0.0

0.745

Rv2680_day32

0.0

1.206

H37Rv_KO_MarP

0.299

-0.693

hypoxia_3wks

-0.327

-0.494

hypoxia_6wks

3.197

-0.319

glycerol

1.147

0.505

cholesterol

1.577

-1.583

AJ

1.239

0.249

Bibs02

-1.123

-0.909

Bibs02c

1.801

1.805

BL6

0.0

-0.231

BL6a

2.197

2.069

BXD01

0.334

-0.455

BXD010

1.256

0.306

BXD011

-0.157

1.804

BXD03

-0.258

1.376

BXD04

0.317

0.796

BXD05

1.67

0.306

BXD06

0.713

0.377

BXD07

0.355

1.06

BXD08

0.614

0.551

BXD09

0.798

1.178

CAST

-0.606

0.277

CCcont

-0.089

-0.109

DS01

-0.45

0.033

DS02

-1.336

-0.032

DS04

2.867

1.525

DS0c

-1.332

0.204

GP01

-0.607

-1.967

GP02

-0.428

-1.658

GP0c

-0.799

-2.081

NOD

-0.428

0.866

NZO

0.512

0.883

PWK

-0.666

-0.465

H37Rv_KO_CtpC

0.81

0.97

H37Rv_KO_CtpD

-0.651

0.303

H37Rv_KO_Rv1272

-0.598

-0.285

H37Rv_KO_SugABC

-0.608

-1.355

H37Rv_KO_MbtN

-0.061

-1.41

Trans05

-0.672

-0.841

macrophage_unactivated

-1.644

-0.054

IL1

0.252

-0.178

Rapamycin

-0.276

0.859

Tcell

-0.945

0.081

GMCSF

0.636

-0.203

IFNab

0.381

0.886

IFNg

0.837

0.131

IFNg_GMCSF1

-1.26

0.518

Rv1432_day32

0.0

-0.356

Rv1565c_day32

0.0

-1.579

secA2_input

-1.234

-1.293

delta_Rv3594

0.268

-2.424

delta_Rv3717

-0.39

-0.856

delta_Rv3811

0.437

-3.15

delta_Rv0954

-1.233

-2.507

PonA1

-1.884

-1.009

EccD1_KO

1.635

-0.299

EspI_KO

2.199

1.691

PE35_KO

1.272

0.181

PPE68_KO

0.512

-0.042

glycerol2

-1.073

-1.871

lignocerate

-0.613

-1.626

oleate

-1.086

-1.095

phosphatidylcholine

-1.073

-2.451

acetate

-1.044

-1.006

glucAc

0.451

-1.764

Rv0950ko

1.122

0.82

Rv1096ko

0.92

-0.124

Rv3684ko

3.134

0.586

delta_otsA_trehalose

0.0

0.722