Top 10 genes with highest correlation to Rv0408/pta:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0994/moeA1 | (cc=0.453) | info on Rv0994/moeA1 |
| Rv0036c/- | (cc=0.4499) | info on Rv0036c/- |
| Rv2053c/fxsA | (cc=0.4364) | info on Rv2053c/fxsA |
| Rv1109c/- | (cc=0.4315) | info on Rv1109c/- |
| Rv3041c/- | (cc=0.4279) | info on Rv3041c/- |
| Rv2362c/recO | (cc=0.4247) | info on Rv2362c/recO |
| Rv1280c/oppA | (cc=0.4181) | info on Rv1280c/oppA |
| Rv3132c/devS | (cc=0.4168) | info on Rv3132c/devS |
| Rv2734/- | (cc=0.4117) | info on Rv2734/- |
| Rv3005c/- | (cc=0.408) | info on Rv3005c/- |
Correlation of Rv0408/pta with Rv3041c/-
Normalized LFCs for Rv0408/pta:
(description and provenance of datasets)
| Rv0408/pta | Rv3041c/- | |
| Fe_supp_jason_reseq | 0.276 | 0.207 |
| low_pH_jason_reseq | -0.883 | 0.547 |
| NO_jason_reseq | 0.294 | 0.118 |
| B6_jason_reseq | 0.026 | -0.575 |
| MHCII_jason_reseq | -0.221 | -0.572 |
| Isoniazid02 | -0.081 | 1.055 |
| Rifampicin4 | -0.761 | -0.769 |
| Ethambutol3 | -0.068 | -0.721 |
| Meropenem3 | 0.588 | -0.552 |
| Vancomycin16 | -0.098 | -0.207 |
| Rv2680_day32 | -0.238 | -1.231 |
| H37Rv_KO_MarP | 0.087 | 0.624 |
| hypoxia_3wks | -0.399 | -1.033 |
| hypoxia_6wks | -1.8 | -2.42 |
| glycerol | 1.066 | 0.471 |
| cholesterol | 0.54 | 0.02 |
| AJ | -1.239 | -1.681 |
| Bibs02 | 0.081 | -0.103 |
| Bibs02c | 0.121 | -0.029 |
| BL6 | -0.246 | -0.776 |
| BL6a | 0.143 | -1.131 |
| BXD01 | -0.601 | -1.312 |
| BXD010 | -0.478 | -0.643 |
| BXD011 | 0.11 | -0.821 |
| BXD03 | -0.126 | -0.592 |
| BXD04 | 0.156 | -1.725 |
| BXD05 | -0.041 | -2.026 |
| BXD06 | 0.319 | -0.67 |
| BXD07 | -0.152 | -1.298 |
| BXD08 | -0.524 | 0.0 |
| BXD09 | -0.064 | -1.057 |
| CAST | -0.716 | -0.651 |
| CCcont | -0.045 | -0.449 |
| DS01 | 0.171 | -0.464 |
| DS02 | 0.545 | -0.287 |
| DS04 | -0.03 | -0.138 |
| DS0c | -0.066 | -0.03 |
| GP01 | 0.293 | -1.378 |
| GP02 | 0.668 | -1.002 |
| GP0c | 0.232 | -1.263 |
| NOD | -0.936 | -1.23 |
| NZO | -1.568 | -2.008 |
| PWK | -0.183 | 0.131 |
| H37Rv_KO_CtpC | 0.329 | -1.09 |
| H37Rv_KO_CtpD | 0.982 | -0.581 |
| H37Rv_KO_Rv1272 | -0.495 | -0.059 |
| H37Rv_KO_SugABC | 0.283 | 0.704 |
| H37Rv_KO_MbtN | 0.426 | 1.408 |
| Trans05 | -0.188 | -1.316 |
| macrophage_unactivated | -0.442 | -1.016 |
| IL1 | -0.225 | -0.872 |
| Rapamycin | -0.046 | -1.436 |
| Tcell | -0.098 | -0.701 |
| GMCSF | -0.161 | -2.82 |
| IFNab | 0.175 | -1.146 |
| IFNg | 0.118 | -1.593 |
| IFNg_GMCSF1 | -0.99 | -1.282 |
| Rv1432_day32 | -0.849 | -1.358 |
| Rv1565c_day32 | 0.028 | 0.466 |
| secA2_input | 0.388 | -0.933 |
| delta_Rv3594 | 0.124 | 2.145 |
| delta_Rv3717 | -0.081 | 1.593 |
| delta_Rv3811 | 0.29 | 1.563 |
| delta_Rv0954 | -0.027 | 1.973 |
| PonA1 | 0.617 | 0.675 |
| EccD1_KO | 0.148 | 0.855 |
| EspI_KO | -0.362 | 0.134 |
| PE35_KO | 0.461 | 0.268 |
| PPE68_KO | 0.419 | 0.998 |
| glycerol2 | -0.317 | -1.216 |
| lignocerate | -0.746 | -1.812 |
| oleate | 0.078 | -0.618 |
| phosphatidylcholine | -0.331 | -0.611 |
| acetate | -1.19 | -0.67 |
| glucAc | -1.681 | -1.367 |
| Rv0950ko | 0.247 | -0.326 |
| Rv1096ko | 0.7 | 0.742 |
| Rv3684ko | 0.472 | 0.19 |
| delta_otsA_trehalose | 0.622 | -0.254 |