Top 10 genes with highest correlation to Rv0408/pta:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0994/moeA1 | (cc=0.453) | info on Rv0994/moeA1 |
| Rv0036c/- | (cc=0.4499) | info on Rv0036c/- |
| Rv2053c/fxsA | (cc=0.4364) | info on Rv2053c/fxsA |
| Rv1109c/- | (cc=0.4315) | info on Rv1109c/- |
| Rv3041c/- | (cc=0.4279) | info on Rv3041c/- |
| Rv2362c/recO | (cc=0.4247) | info on Rv2362c/recO |
| Rv1280c/oppA | (cc=0.4181) | info on Rv1280c/oppA |
| Rv3132c/devS | (cc=0.4168) | info on Rv3132c/devS |
| Rv2734/- | (cc=0.4117) | info on Rv2734/- |
| Rv3005c/- | (cc=0.408) | info on Rv3005c/- |
Correlation of Rv0408/pta with Rv3005c/-
Normalized LFCs for Rv0408/pta:
(description and provenance of datasets)
| Rv0408/pta | Rv3005c/- | |
| Fe_supp_jason_reseq | 0.276 | -0.088 |
| low_pH_jason_reseq | -0.883 | -2.259 |
| NO_jason_reseq | 0.294 | -2.772 |
| B6_jason_reseq | 0.026 | -3.879 |
| MHCII_jason_reseq | -0.221 | -2.39 |
| Isoniazid02 | -0.081 | 0.291 |
| Rifampicin4 | -0.761 | -6.0 |
| Ethambutol3 | -0.068 | -0.766 |
| Meropenem3 | 0.588 | 0.285 |
| Vancomycin16 | -0.098 | -4.913 |
| Rv2680_day32 | -0.238 | -2.801 |
| H37Rv_KO_MarP | 0.087 | -4.764 |
| hypoxia_3wks | -0.399 | -1.384 |
| hypoxia_6wks | -1.8 | -2.301 |
| glycerol | 1.066 | -0.357 |
| cholesterol | 0.54 | 0.989 |
| AJ | -1.239 | -1.906 |
| Bibs02 | 0.081 | 1.601 |
| Bibs02c | 0.121 | 1.646 |
| BL6 | -0.246 | -1.841 |
| BL6a | 0.143 | 0.28 |
| BXD01 | -0.601 | -2.633 |
| BXD010 | -0.478 | -2.398 |
| BXD011 | 0.11 | -1.554 |
| BXD03 | -0.126 | -1.044 |
| BXD04 | 0.156 | -1.464 |
| BXD05 | -0.041 | -1.981 |
| BXD06 | 0.319 | -0.967 |
| BXD07 | -0.152 | -1.59 |
| BXD08 | -0.524 | -2.401 |
| BXD09 | -0.064 | -2.209 |
| CAST | -0.716 | -2.012 |
| CCcont | -0.045 | 0.538 |
| DS01 | 0.171 | 2.38 |
| DS02 | 0.545 | 1.638 |
| DS04 | -0.03 | 1.84 |
| DS0c | -0.066 | 1.442 |
| GP01 | 0.293 | -0.811 |
| GP02 | 0.668 | -1.502 |
| GP0c | 0.232 | -1.493 |
| NOD | -0.936 | -1.627 |
| NZO | -1.568 | -3.135 |
| PWK | -0.183 | -2.185 |
| H37Rv_KO_CtpC | 0.329 | 0.879 |
| H37Rv_KO_CtpD | 0.982 | 0.435 |
| H37Rv_KO_Rv1272 | -0.495 | -0.673 |
| H37Rv_KO_SugABC | 0.283 | -0.651 |
| H37Rv_KO_MbtN | 0.426 | -0.061 |
| Trans05 | -0.188 | -1.177 |
| macrophage_unactivated | -0.442 | -0.331 |
| IL1 | -0.225 | -1.516 |
| Rapamycin | -0.046 | -0.948 |
| Tcell | -0.098 | -1.548 |
| GMCSF | -0.161 | -1.545 |
| IFNab | 0.175 | 0.435 |
| IFNg | 0.118 | -1.563 |
| IFNg_GMCSF1 | -0.99 | -2.083 |
| Rv1432_day32 | -0.849 | -2.697 |
| Rv1565c_day32 | 0.028 | -2.385 |
| secA2_input | 0.388 | 0.805 |
| delta_Rv3594 | 0.124 | 0.76 |
| delta_Rv3717 | -0.081 | 1.219 |
| delta_Rv3811 | 0.29 | 0.9 |
| delta_Rv0954 | -0.027 | -0.097 |
| PonA1 | 0.617 | 1.933 |
| EccD1_KO | 0.148 | -0.335 |
| EspI_KO | -0.362 | 0.382 |
| PE35_KO | 0.461 | -0.35 |
| PPE68_KO | 0.419 | -0.134 |
| glycerol2 | -0.317 | 0.347 |
| lignocerate | -0.746 | -0.58 |
| oleate | 0.078 | -1.294 |
| phosphatidylcholine | -0.331 | -0.95 |
| acetate | -1.19 | -0.407 |
| glucAc | -1.681 | 0.0 |
| Rv0950ko | 0.247 | -0.039 |
| Rv1096ko | 0.7 | 0.1 |
| Rv3684ko | 0.472 | -0.904 |
| delta_otsA_trehalose | 0.622 | 0.463 |