Top 10 genes with highest correlation to Rv0245/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3261/fbiA | (cc=0.5779) | info on Rv3261/fbiA |
| Rv1638/uvrA | (cc=0.5592) | info on Rv1638/uvrA |
| Rv1364c/- | (cc=0.5287) | info on Rv1364c/- |
| Rv0003/recF | (cc=0.5149) | info on Rv0003/recF |
| Rv2737c/recA | (cc=0.5105) | info on Rv2737c/recA |
| Rv0324/- | (cc=0.5084) | info on Rv0324/- |
| Rv3270/ctpC | (cc=0.4926) | info on Rv3270/ctpC |
| Rv3417c/groEL1 | (cc=0.4919) | info on Rv3417c/groEL1 |
| Rv3269/- | (cc=0.488) | info on Rv3269/- |
| Rv2259/mscR | (cc=0.4857) | info on Rv2259/mscR |
Correlation of Rv0245/- with Rv2259/mscR
Normalized LFCs for Rv0245/-:
(description and provenance of datasets)
| Rv0245/- | Rv2259/mscR | |
| Fe_supp_jason_reseq | 2.145 | 3.863 |
| low_pH_jason_reseq | -0.592 | 0.211 |
| NO_jason_reseq | 1.005 | 0.0 |
| B6_jason_reseq | -1.334 | -0.153 |
| MHCII_jason_reseq | -0.804 | -0.135 |
| Isoniazid02 | 0.134 | -1.385 |
| Rifampicin4 | 0.91 | 0.774 |
| Ethambutol3 | -0.384 | -0.991 |
| Meropenem3 | 0.069 | -2.803 |
| Vancomycin16 | 1.677 | -0.65 |
| Rv2680_day32 | 1.357 | 0.0 |
| H37Rv_KO_MarP | -0.508 | -0.416 |
| hypoxia_3wks | -0.427 | -1.543 |
| hypoxia_6wks | -0.796 | -0.585 |
| glycerol | 2.836 | 0.992 |
| cholesterol | -0.132 | 1.194 |
| AJ | 0.983 | 0.815 |
| Bibs02 | -0.348 | 0.0 |
| Bibs02c | 0.629 | 0.0 |
| BL6 | 0.456 | 0.343 |
| BL6a | 1.679 | 0.198 |
| BXD01 | 1.457 | 0.13 |
| BXD010 | 0.871 | 0.0 |
| BXD011 | 1.306 | 0.243 |
| BXD03 | 0.92 | 0.258 |
| BXD04 | 1.184 | 0.607 |
| BXD05 | 1.032 | 0.135 |
| BXD06 | 1.57 | 0.656 |
| BXD07 | 1.668 | 0.0 |
| BXD08 | 0.564 | 0.0 |
| BXD09 | 1.941 | 0.386 |
| CAST | 0.192 | 0.0 |
| CCcont | 4.343 | 3.429 |
| DS01 | 1.261 | 0.236 |
| DS02 | 0.35 | 0.0 |
| DS04 | 2.389 | 0.822 |
| DS0c | 0.79 | 0.0 |
| GP01 | 0.159 | 0.271 |
| GP02 | -0.159 | 0.0 |
| GP0c | 1.151 | 0.248 |
| NOD | 0.0 | 0.0 |
| NZO | 0.727 | 0.199 |
| PWK | 0.315 | 0.374 |
| H37Rv_KO_CtpC | -0.148 | 0.162 |
| H37Rv_KO_CtpD | 0.676 | 0.537 |
| H37Rv_KO_Rv1272 | -0.269 | 0.141 |
| H37Rv_KO_SugABC | 2.205 | 0.487 |
| H37Rv_KO_MbtN | 0.603 | 0.691 |
| Trans05 | 0.698 | 0.0 |
| macrophage_unactivated | 1.098 | 0.436 |
| IL1 | -2.251 | 0.0 |
| Rapamycin | 0.0 | 0.0 |
| Tcell | -1.496 | 0.0 |
| GMCSF | 0.779 | 0.0 |
| IFNab | 0.193 | 0.0 |
| IFNg | -1.743 | 0.0 |
| IFNg_GMCSF1 | 1.093 | 0.0 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 2.829 | 0.0 |
| secA2_input | -1.007 | -2.259 |
| delta_Rv3594 | 1.504 | -0.493 |
| delta_Rv3717 | -1.058 | -1.023 |
| delta_Rv3811 | 0.983 | 0.336 |
| delta_Rv0954 | 1.292 | 0.912 |
| PonA1 | 1.549 | -0.851 |
| EccD1_KO | 0.112 | -1.704 |
| EspI_KO | 1.486 | -3.434 |
| PE35_KO | 2.529 | 1.625 |
| PPE68_KO | 1.475 | -0.269 |
| glycerol2 | -0.394 | -0.745 |
| lignocerate | -0.303 | -0.812 |
| oleate | -0.991 | -2.101 |
| phosphatidylcholine | -1.0 | -1.877 |
| acetate | 0.66 | 0.226 |
| glucAc | 0.793 | 0.269 |
| Rv0950ko | 0.03 | -0.211 |
| Rv1096ko | -0.838 | -0.434 |
| Rv3684ko | 0.612 | 0.429 |
| delta_otsA_trehalose | -0.11 | 0.164 |