Top 10 genes with highest correlation to Rv0229c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0386/- | (cc=0.5902) | info on Rv0386/- |
| Rv0470A/- | (cc=0.5777) | info on Rv0470A/- |
| Rv0375c/- | (cc=0.5425) | info on Rv0375c/- |
| Rv3100c/smpB | (cc=0.5036) | info on Rv3100c/smpB |
| Rv2670c/- | (cc=0.5) | info on Rv2670c/- |
| Rv0959/- | (cc=0.4977) | info on Rv0959/- |
| Rv0271c/fadE6 | (cc=0.4674) | info on Rv0271c/fadE6 |
| Rv1192/- | (cc=0.4673) | info on Rv1192/- |
| Rv3655c/- | (cc=0.4653) | info on Rv3655c/- |
| Rv0233/nrdB | (cc=0.4631) | info on Rv0233/nrdB |
Correlation of Rv0229c/- with Rv3100c/smpB
Normalized LFCs for Rv0229c/-:
(description and provenance of datasets)
| Rv0229c/- | Rv3100c/smpB | |
| Fe_supp_jason_reseq | 0.813 | 0.38 |
| low_pH_jason_reseq | -0.32 | -0.231 |
| NO_jason_reseq | -0.184 | -0.362 |
| B6_jason_reseq | 1.177 | 3.094 |
| MHCII_jason_reseq | 0.76 | 0.0 |
| Isoniazid02 | 0.909 | -0.851 |
| Rifampicin4 | 0.225 | 0.252 |
| Ethambutol3 | 1.019 | 0.966 |
| Meropenem3 | 1.029 | -0.386 |
| Vancomycin16 | 0.31 | 0.48 |
| Rv2680_day32 | -0.057 | 0.0 |
| H37Rv_KO_MarP | 0.82 | 0.0 |
| hypoxia_3wks | -0.179 | -2.333 |
| hypoxia_6wks | -0.319 | -0.637 |
| glycerol | -0.538 | -0.459 |
| cholesterol | -0.273 | -2.31 |
| AJ | -0.313 | 1.859 |
| Bibs02 | 0.041 | 0.747 |
| Bibs02c | 1.122 | 0.58 |
| BL6 | 0.289 | -1.87 |
| BL6a | 0.354 | 0.214 |
| BXD01 | -0.479 | -1.947 |
| BXD010 | 0.217 | -0.187 |
| BXD011 | -0.998 | -2.032 |
| BXD03 | -0.36 | -2.022 |
| BXD04 | -1.112 | -1.973 |
| BXD05 | -0.695 | -2.012 |
| BXD06 | -0.629 | -2.129 |
| BXD07 | -0.464 | -1.829 |
| BXD08 | -0.805 | -1.868 |
| BXD09 | -0.324 | -2.242 |
| CAST | -0.08 | -0.657 |
| CCcont | -0.421 | -2.098 |
| DS01 | 0.423 | -0.974 |
| DS02 | 0.6 | 0.889 |
| DS04 | 0.5 | -2.412 |
| DS0c | -0.115 | -0.685 |
| GP01 | 0.177 | -1.304 |
| GP02 | -0.174 | -1.327 |
| GP0c | 0.233 | -2.074 |
| NOD | 0.708 | -0.449 |
| NZO | 0.308 | 0.688 |
| PWK | -0.523 | -0.045 |
| H37Rv_KO_CtpC | -0.652 | -2.282 |
| H37Rv_KO_CtpD | -0.435 | -1.398 |
| H37Rv_KO_Rv1272 | -0.387 | -2.25 |
| H37Rv_KO_SugABC | -0.599 | -1.481 |
| H37Rv_KO_MbtN | -0.886 | -1.541 |
| Trans05 | 0.406 | -2.084 |
| macrophage_unactivated | 1.758 | 0.0 |
| IL1 | 0.24 | 0.0 |
| Rapamycin | -0.11 | 0.0 |
| Tcell | 0.339 | 1.58 |
| GMCSF | -0.063 | 0.0 |
| IFNab | 0.574 | 3.44 |
| IFNg | 0.155 | 0.0 |
| IFNg_GMCSF1 | 0.597 | 0.434 |
| Rv1432_day32 | 0.403 | 0.0 |
| Rv1565c_day32 | -0.057 | 0.0 |
| secA2_input | -0.435 | 0.593 |
| delta_Rv3594 | -0.551 | -1.416 |
| delta_Rv3717 | -0.609 | 1.305 |
| delta_Rv3811 | -0.535 | -1.172 |
| delta_Rv0954 | 0.372 | -1.196 |
| PonA1 | -0.11 | 1.24 |
| EccD1_KO | 0.105 | 1.194 |
| EspI_KO | -0.416 | -0.305 |
| PE35_KO | -0.195 | 0.292 |
| PPE68_KO | -0.323 | 0.0 |
| glycerol2 | 0.376 | 0.193 |
| lignocerate | 0.078 | 0.0 |
| oleate | 0.163 | 0.0 |
| phosphatidylcholine | 0.031 | 0.0 |
| acetate | -0.667 | 0.0 |
| glucAc | -0.385 | 0.0 |
| Rv0950ko | 0.654 | 2.087 |
| Rv1096ko | 1.439 | 2.844 |
| Rv3684ko | 0.514 | 0.675 |
| delta_otsA_trehalose | -0.449 | 0.0 |