Top 10 genes with highest correlation to Rv0111/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0999/- | (cc=0.6698) | info on Rv0999/- |
| Rv2224c/caeA | (cc=0.6175) | info on Rv2224c/caeA |
| Rv2525c/- | (cc=0.5914) | info on Rv2525c/- |
| Rv0129c/fbpC | (cc=0.549) | info on Rv0129c/fbpC |
| Rv2734/- | (cc=0.5387) | info on Rv2734/- |
| Rv1698/mctB | (cc=0.5326) | info on Rv1698/mctB |
| Rv3717/- | (cc=0.5147) | info on Rv3717/- |
| Rv0099/fadD10 | (cc=0.4961) | info on Rv0099/fadD10 |
| Rv3672c/- | (cc=0.4815) | info on Rv3672c/- |
| Rv2535c/pepQ | (cc=0.4659) | info on Rv2535c/pepQ |
Correlation of Rv0111/- with Rv2525c/-
Normalized LFCs for Rv0111/-:
(description and provenance of datasets)
| Rv0111/- | Rv2525c/- | |
| Fe_supp_jason_reseq | 0.017 | 0.016 |
| low_pH_jason_reseq | -0.877 | -1.698 |
| NO_jason_reseq | 0.0 | -0.362 |
| B6_jason_reseq | -0.172 | -1.161 |
| MHCII_jason_reseq | -0.114 | -0.859 |
| Isoniazid02 | -1.209 | 0.771 |
| Rifampicin4 | -3.747 | -6.0 |
| Ethambutol3 | -1.633 | -0.255 |
| Meropenem3 | -1.485 | -3.837 |
| Vancomycin16 | -2.059 | -3.658 |
| Rv2680_day32 | -0.295 | -1.177 |
| H37Rv_KO_MarP | 0.025 | -0.412 |
| hypoxia_3wks | -0.247 | -0.498 |
| hypoxia_6wks | -0.24 | -0.424 |
| glycerol | 0.035 | -0.405 |
| cholesterol | 1.633 | 0.509 |
| AJ | -1.425 | -1.044 |
| Bibs02 | -0.188 | 0.301 |
| Bibs02c | -1.123 | 0.086 |
| BL6 | 0.253 | -0.258 |
| BL6a | -0.326 | -0.247 |
| BXD01 | -0.501 | -1.396 |
| BXD010 | 0.635 | -0.272 |
| BXD011 | 0.12 | -0.658 |
| BXD03 | 0.477 | -0.241 |
| BXD04 | -0.242 | -0.461 |
| BXD05 | 0.33 | -0.366 |
| BXD06 | -0.446 | -0.428 |
| BXD07 | -0.242 | -0.41 |
| BXD08 | -0.29 | -0.462 |
| BXD09 | -0.025 | 0.083 |
| CAST | -2.196 | -1.245 |
| CCcont | 0.68 | 0.246 |
| DS01 | -0.021 | 0.077 |
| DS02 | -0.597 | -0.258 |
| DS04 | -1.161 | -1.033 |
| DS0c | -0.473 | 0.347 |
| GP01 | 0.192 | 0.774 |
| GP02 | -1.001 | -0.251 |
| GP0c | 0.045 | 0.864 |
| NOD | -1.206 | 0.862 |
| NZO | -2.456 | -0.799 |
| PWK | -0.755 | -1.707 |
| H37Rv_KO_CtpC | -0.233 | 0.368 |
| H37Rv_KO_CtpD | 0.676 | -0.561 |
| H37Rv_KO_Rv1272 | 0.317 | -1.197 |
| H37Rv_KO_SugABC | 0.141 | -0.257 |
| H37Rv_KO_MbtN | -0.096 | -0.977 |
| Trans05 | -0.024 | -0.339 |
| macrophage_unactivated | 0.335 | 0.597 |
| IL1 | 0.371 | 0.917 |
| Rapamycin | 0.577 | 0.169 |
| Tcell | 0.192 | 0.469 |
| GMCSF | 0.304 | 0.222 |
| IFNab | 0.774 | 0.423 |
| IFNg | 0.334 | 0.107 |
| IFNg_GMCSF1 | 0.0 | -0.047 |
| Rv1432_day32 | -1.036 | -1.24 |
| Rv1565c_day32 | -2.504 | -1.178 |
| secA2_input | 0.322 | 0.712 |
| delta_Rv3594 | -0.332 | -0.574 |
| delta_Rv3717 | -0.118 | -0.019 |
| delta_Rv3811 | -0.449 | -1.114 |
| delta_Rv0954 | -0.053 | -0.283 |
| PonA1 | -0.133 | 0.275 |
| EccD1_KO | 0.0 | -0.483 |
| EspI_KO | 0.191 | -0.433 |
| PE35_KO | -0.146 | -1.044 |
| PPE68_KO | 0.474 | -0.822 |
| glycerol2 | 0.238 | -0.174 |
| lignocerate | -2.295 | -0.486 |
| oleate | -0.705 | -0.537 |
| phosphatidylcholine | -2.35 | -0.391 |
| acetate | -0.377 | 0.166 |
| glucAc | 0.256 | -0.211 |
| Rv0950ko | 0.0 | 0.588 |
| Rv1096ko | 0.03 | 1.013 |
| Rv3684ko | 0.157 | 0.508 |
| delta_otsA_trehalose | -0.564 | -0.259 |