Top 10 genes with highest correlation to Rv0111/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0999/- | (cc=0.6698) | info on Rv0999/- |
| Rv2224c/caeA | (cc=0.6175) | info on Rv2224c/caeA |
| Rv2525c/- | (cc=0.5914) | info on Rv2525c/- |
| Rv0129c/fbpC | (cc=0.549) | info on Rv0129c/fbpC |
| Rv2734/- | (cc=0.5387) | info on Rv2734/- |
| Rv1698/mctB | (cc=0.5326) | info on Rv1698/mctB |
| Rv3717/- | (cc=0.5147) | info on Rv3717/- |
| Rv0099/fadD10 | (cc=0.4961) | info on Rv0099/fadD10 |
| Rv3672c/- | (cc=0.4815) | info on Rv3672c/- |
| Rv2535c/pepQ | (cc=0.4659) | info on Rv2535c/pepQ |
Correlation of Rv0111/- with Rv2224c/caeA
Normalized LFCs for Rv0111/-:
(description and provenance of datasets)
| Rv0111/- | Rv2224c/caeA | |
| Fe_supp_jason_reseq | 0.017 | 2.788 |
| low_pH_jason_reseq | -0.877 | 0.545 |
| NO_jason_reseq | 0.0 | -3.87 |
| B6_jason_reseq | -0.172 | -1.175 |
| MHCII_jason_reseq | -0.114 | -0.49 |
| Isoniazid02 | -1.209 | -0.081 |
| Rifampicin4 | -3.747 | -6.0 |
| Ethambutol3 | -1.633 | -3.633 |
| Meropenem3 | -1.485 | -4.666 |
| Vancomycin16 | -2.059 | -6.0 |
| Rv2680_day32 | -0.295 | -2.43 |
| H37Rv_KO_MarP | 0.025 | -4.312 |
| hypoxia_3wks | -0.247 | -3.465 |
| hypoxia_6wks | -0.24 | -2.907 |
| glycerol | 0.035 | 1.659 |
| cholesterol | 1.633 | 2.409 |
| AJ | -1.425 | -3.629 |
| Bibs02 | -0.188 | -2.044 |
| Bibs02c | -1.123 | -2.537 |
| BL6 | 0.253 | 0.28 |
| BL6a | -0.326 | -1.53 |
| BXD01 | -0.501 | -1.646 |
| BXD010 | 0.635 | -0.061 |
| BXD011 | 0.12 | -0.338 |
| BXD03 | 0.477 | -1.393 |
| BXD04 | -0.242 | -1.562 |
| BXD05 | 0.33 | -0.357 |
| BXD06 | -0.446 | -1.375 |
| BXD07 | -0.242 | -0.94 |
| BXD08 | -0.29 | -1.68 |
| BXD09 | -0.025 | -0.553 |
| CAST | -2.196 | -3.947 |
| CCcont | 0.68 | 2.729 |
| DS01 | -0.021 | -3.535 |
| DS02 | -0.597 | -1.679 |
| DS04 | -1.161 | -1.563 |
| DS0c | -0.473 | -2.857 |
| GP01 | 0.192 | -0.67 |
| GP02 | -1.001 | -1.495 |
| GP0c | 0.045 | 0.932 |
| NOD | -1.206 | -2.958 |
| NZO | -2.456 | -3.585 |
| PWK | -0.755 | -3.704 |
| H37Rv_KO_CtpC | -0.233 | 0.146 |
| H37Rv_KO_CtpD | 0.676 | -0.557 |
| H37Rv_KO_Rv1272 | 0.317 | 0.467 |
| H37Rv_KO_SugABC | 0.141 | -0.587 |
| H37Rv_KO_MbtN | -0.096 | 1.022 |
| Trans05 | -0.024 | 0.292 |
| macrophage_unactivated | 0.335 | -0.881 |
| IL1 | 0.371 | 0.098 |
| Rapamycin | 0.577 | -0.034 |
| Tcell | 0.192 | -1.61 |
| GMCSF | 0.304 | -1.648 |
| IFNab | 0.774 | 1.575 |
| IFNg | 0.334 | -1.24 |
| IFNg_GMCSF1 | 0.0 | -1.653 |
| Rv1432_day32 | -1.036 | -3.245 |
| Rv1565c_day32 | -2.504 | -0.218 |
| secA2_input | 0.322 | -0.266 |
| delta_Rv3594 | -0.332 | 0.797 |
| delta_Rv3717 | -0.118 | 0.213 |
| delta_Rv3811 | -0.449 | 0.464 |
| delta_Rv0954 | -0.053 | 0.72 |
| PonA1 | -0.133 | -3.854 |
| EccD1_KO | 0.0 | -0.013 |
| EspI_KO | 0.191 | 0.04 |
| PE35_KO | -0.146 | -1.948 |
| PPE68_KO | 0.474 | -0.614 |
| glycerol2 | 0.238 | -2.159 |
| lignocerate | -2.295 | -2.67 |
| oleate | -0.705 | -3.797 |
| phosphatidylcholine | -2.35 | -3.751 |
| acetate | -0.377 | 0.444 |
| glucAc | 0.256 | 0.0 |
| Rv0950ko | 0.0 | -1.019 |
| Rv1096ko | 0.03 | 1.043 |
| Rv3684ko | 0.157 | 1.097 |
| delta_otsA_trehalose | -0.564 | 0.04 |