Top 10 genes with highest correlation to Rv0111/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0999/- | (cc=0.6698) | info on Rv0999/- |
| Rv2224c/caeA | (cc=0.6175) | info on Rv2224c/caeA |
| Rv2525c/- | (cc=0.5914) | info on Rv2525c/- |
| Rv0129c/fbpC | (cc=0.549) | info on Rv0129c/fbpC |
| Rv2734/- | (cc=0.5387) | info on Rv2734/- |
| Rv1698/mctB | (cc=0.5326) | info on Rv1698/mctB |
| Rv3717/- | (cc=0.5147) | info on Rv3717/- |
| Rv0099/fadD10 | (cc=0.4961) | info on Rv0099/fadD10 |
| Rv3672c/- | (cc=0.4815) | info on Rv3672c/- |
| Rv2535c/pepQ | (cc=0.4659) | info on Rv2535c/pepQ |
Correlation of Rv0111/- with Rv0999/-
Normalized LFCs for Rv0111/-:
(description and provenance of datasets)
| Rv0111/- | Rv0999/- | |
| Fe_supp_jason_reseq | 0.017 | 1.07 |
| low_pH_jason_reseq | -0.877 | -2.859 |
| NO_jason_reseq | 0.0 | -0.79 |
| B6_jason_reseq | -0.172 | -0.668 |
| MHCII_jason_reseq | -0.114 | -0.177 |
| Isoniazid02 | -1.209 | -1.18 |
| Rifampicin4 | -3.747 | -6.0 |
| Ethambutol3 | -1.633 | -3.222 |
| Meropenem3 | -1.485 | -3.835 |
| Vancomycin16 | -2.059 | -6.0 |
| Rv2680_day32 | -0.295 | -0.811 |
| H37Rv_KO_MarP | 0.025 | -0.865 |
| hypoxia_3wks | -0.247 | 0.056 |
| hypoxia_6wks | -0.24 | -0.307 |
| glycerol | 0.035 | 0.398 |
| cholesterol | 1.633 | 2.859 |
| AJ | -1.425 | -0.871 |
| Bibs02 | -0.188 | 0.925 |
| Bibs02c | -1.123 | -0.083 |
| BL6 | 0.253 | -1.211 |
| BL6a | -0.326 | -1.322 |
| BXD01 | -0.501 | -0.918 |
| BXD010 | 0.635 | -1.239 |
| BXD011 | 0.12 | 1.126 |
| BXD03 | 0.477 | -0.489 |
| BXD04 | -0.242 | -0.673 |
| BXD05 | 0.33 | -0.396 |
| BXD06 | -0.446 | -0.748 |
| BXD07 | -0.242 | -0.58 |
| BXD08 | -0.29 | -0.659 |
| BXD09 | -0.025 | -0.395 |
| CAST | -2.196 | -1.957 |
| CCcont | 0.68 | 0.991 |
| DS01 | -0.021 | -0.546 |
| DS02 | -0.597 | 0.429 |
| DS04 | -1.161 | -0.266 |
| DS0c | -0.473 | -0.396 |
| GP01 | 0.192 | 0.574 |
| GP02 | -1.001 | 1.568 |
| GP0c | 0.045 | 0.445 |
| NOD | -1.206 | -0.975 |
| NZO | -2.456 | -1.608 |
| PWK | -0.755 | -0.602 |
| H37Rv_KO_CtpC | -0.233 | 0.918 |
| H37Rv_KO_CtpD | 0.676 | 1.633 |
| H37Rv_KO_Rv1272 | 0.317 | -0.146 |
| H37Rv_KO_SugABC | 0.141 | 1.311 |
| H37Rv_KO_MbtN | -0.096 | -0.317 |
| Trans05 | -0.024 | -0.733 |
| macrophage_unactivated | 0.335 | 0.458 |
| IL1 | 0.371 | 0.608 |
| Rapamycin | 0.577 | 1.903 |
| Tcell | 0.192 | -1.082 |
| GMCSF | 0.304 | 0.584 |
| IFNab | 0.774 | 1.224 |
| IFNg | 0.334 | 0.051 |
| IFNg_GMCSF1 | 0.0 | 0.845 |
| Rv1432_day32 | -1.036 | -1.785 |
| Rv1565c_day32 | -2.504 | -0.815 |
| secA2_input | 0.322 | -0.437 |
| delta_Rv3594 | -0.332 | 1.088 |
| delta_Rv3717 | -0.118 | 0.487 |
| delta_Rv3811 | -0.449 | 0.77 |
| delta_Rv0954 | -0.053 | 0.674 |
| PonA1 | -0.133 | 0.188 |
| EccD1_KO | 0.0 | -0.789 |
| EspI_KO | 0.191 | 0.1 |
| PE35_KO | -0.146 | 0.137 |
| PPE68_KO | 0.474 | 0.189 |
| glycerol2 | 0.238 | -0.747 |
| lignocerate | -2.295 | -2.208 |
| oleate | -0.705 | -0.855 |
| phosphatidylcholine | -2.35 | -1.288 |
| acetate | -0.377 | -0.497 |
| glucAc | 0.256 | -2.262 |
| Rv0950ko | 0.0 | -1.601 |
| Rv1096ko | 0.03 | -0.989 |
| Rv3684ko | 0.157 | -1.189 |
| delta_otsA_trehalose | -0.564 | -0.862 |