Top 10 genes with highest correlation to Rv0074/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0305c/PPE6 | (cc=0.4881) | info on Rv0305c/PPE6 |
| Rv0907/- | (cc=0.4872) | info on Rv0907/- |
| Rv1585c/- | (cc=0.4725) | info on Rv1585c/- |
| Rv0255c/cobQ1 | (cc=0.4664) | info on Rv0255c/cobQ1 |
| Rv0112/gca | (cc=0.4539) | info on Rv0112/gca |
| Rv3787c/- | (cc=0.4534) | info on Rv3787c/- |
| Rv3857c/- | (cc=0.452) | info on Rv3857c/- |
| Rv0822c/- | (cc=0.4427) | info on Rv0822c/- |
| Rv2430c/PPE41 | (cc=0.4233) | info on Rv2430c/PPE41 |
| Rv1664/pks9 | (cc=0.423) | info on Rv1664/pks9 |
Correlation of Rv0074/- with Rv0112/gca
Normalized LFCs for Rv0074/-:
(description and provenance of datasets)
| Rv0074/- | Rv0112/gca | |
| Fe_supp_jason_reseq | -0.65 | 0.415 |
| low_pH_jason_reseq | -0.172 | 1.335 |
| NO_jason_reseq | -0.105 | 0.171 |
| B6_jason_reseq | -0.694 | 0.292 |
| MHCII_jason_reseq | -0.122 | -0.342 |
| Isoniazid02 | -0.049 | 0.636 |
| Rifampicin4 | 0.208 | -0.165 |
| Ethambutol3 | 0.081 | 1.454 |
| Meropenem3 | 0.193 | -0.359 |
| Vancomycin16 | 0.374 | 0.157 |
| Rv2680_day32 | 0.247 | -0.383 |
| H37Rv_KO_MarP | 0.329 | -0.223 |
| hypoxia_3wks | 0.391 | 0.53 |
| hypoxia_6wks | 0.09 | 0.142 |
| glycerol | -0.799 | -0.753 |
| cholesterol | -0.351 | -0.469 |
| AJ | -0.067 | 1.239 |
| Bibs02 | -1.113 | -0.682 |
| Bibs02c | 0.02 | 0.887 |
| BL6 | -0.761 | 0.839 |
| BL6a | -0.019 | 1.663 |
| BXD01 | -0.212 | 1.652 |
| BXD010 | -0.1 | 1.81 |
| BXD011 | -0.152 | 2.088 |
| BXD03 | 0.276 | 1.673 |
| BXD04 | 0.012 | 0.581 |
| BXD05 | 0.487 | 0.747 |
| BXD06 | -0.174 | 1.26 |
| BXD07 | -0.32 | 1.073 |
| BXD08 | 0.609 | 0.987 |
| BXD09 | -0.276 | 1.384 |
| CAST | -0.204 | 0.569 |
| CCcont | -0.551 | 0.701 |
| DS01 | 0.743 | 0.236 |
| DS02 | 0.041 | 0.711 |
| DS04 | 0.663 | 0.254 |
| DS0c | 0.288 | 0.815 |
| GP01 | 0.036 | 0.067 |
| GP02 | 0.737 | 0.109 |
| GP0c | 0.246 | 1.478 |
| NOD | 1.417 | 1.054 |
| NZO | -0.709 | 0.548 |
| PWK | -0.153 | 1.088 |
| H37Rv_KO_CtpC | 0.578 | 0.966 |
| H37Rv_KO_CtpD | 0.125 | 1.023 |
| H37Rv_KO_Rv1272 | 0.311 | 1.427 |
| H37Rv_KO_SugABC | 1.183 | 0.976 |
| H37Rv_KO_MbtN | -0.01 | 1.612 |
| Trans05 | 1.075 | 2.074 |
| macrophage_unactivated | 0.051 | 0.139 |
| IL1 | -0.243 | 0.0 |
| Rapamycin | -0.147 | 0.203 |
| Tcell | 0.629 | 0.554 |
| GMCSF | 0.473 | 0.655 |
| IFNab | -0.508 | -0.429 |
| IFNg | 0.043 | 0.345 |
| IFNg_GMCSF1 | 0.383 | 0.779 |
| Rv1432_day32 | -0.485 | -0.164 |
| Rv1565c_day32 | -0.885 | 0.065 |
| secA2_input | -0.291 | -1.342 |
| delta_Rv3594 | -0.534 | 0.035 |
| delta_Rv3717 | -1.155 | 0.141 |
| delta_Rv3811 | -1.038 | -0.219 |
| delta_Rv0954 | -0.267 | -0.726 |
| PonA1 | 0.695 | 0.382 |
| EccD1_KO | -0.46 | -0.572 |
| EspI_KO | -1.132 | -1.132 |
| PE35_KO | -0.525 | -0.755 |
| PPE68_KO | -0.739 | -0.691 |
| glycerol2 | -0.161 | -0.234 |
| lignocerate | -0.532 | -0.374 |
| oleate | 0.047 | 0.474 |
| phosphatidylcholine | -0.531 | -0.056 |
| acetate | -0.379 | -0.17 |
| glucAc | -0.549 | -0.722 |
| Rv0950ko | -0.467 | 0.374 |
| Rv1096ko | 0.259 | -0.48 |
| Rv3684ko | -0.098 | -0.599 |
| delta_otsA_trehalose | 1.473 | 2.09 |