Top 10 genes with highest correlation to Rv0063/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1675c/cmr | (cc=0.5603) | info on Rv1675c/cmr |
| Rv0669c/- | (cc=0.5197) | info on Rv0669c/- |
| Rv0338c/- | (cc=0.5024) | info on Rv0338c/- |
| Rv3283/sseA | (cc=0.4817) | info on Rv3283/sseA |
| Rv2268c/cyp128 | (cc=0.4799) | info on Rv2268c/cyp128 |
| Rv1371/- | (cc=0.4686) | info on Rv1371/- |
| Rv2431c/PE25 | (cc=0.4568) | info on Rv2431c/PE25 |
| Rv3509c/ilvX | (cc=0.4437) | info on Rv3509c/ilvX |
| Rv3154/nuoJ | (cc=0.4374) | info on Rv3154/nuoJ |
| Rv3529c/- | (cc=0.435) | info on Rv3529c/- |
Correlation of Rv0063/- with Rv2268c/cyp128
Normalized LFCs for Rv0063/-:
(description and provenance of datasets)
| Rv0063/- | Rv2268c/cyp128 | |
| Fe_supp_jason_reseq | -0.568 | -0.906 |
| low_pH_jason_reseq | -0.172 | -0.196 |
| NO_jason_reseq | -0.026 | -0.714 |
| B6_jason_reseq | 0.872 | -0.834 |
| MHCII_jason_reseq | 0.139 | -1.068 |
| Isoniazid02 | -0.228 | -0.105 |
| Rifampicin4 | 0.0 | -0.298 |
| Ethambutol3 | -0.134 | -0.134 |
| Meropenem3 | 0.037 | 0.875 |
| Vancomycin16 | 0.218 | 0.0 |
| Rv2680_day32 | -0.874 | -0.874 |
| H37Rv_KO_MarP | 0.775 | -0.11 |
| hypoxia_3wks | -0.805 | -0.518 |
| hypoxia_6wks | -0.24 | -0.161 |
| glycerol | 1.176 | 1.434 |
| cholesterol | 2.914 | 6.0 |
| AJ | 0.788 | 0.632 |
| Bibs02 | -0.029 | 0.792 |
| Bibs02c | 0.587 | 1.299 |
| BL6 | 0.621 | 1.26 |
| BL6a | 0.43 | 0.623 |
| BXD01 | -0.098 | 0.489 |
| BXD010 | 0.261 | 0.0 |
| BXD011 | 0.587 | 0.29 |
| BXD03 | 0.756 | 1.271 |
| BXD04 | 0.354 | -0.408 |
| BXD05 | 0.599 | 0.814 |
| BXD06 | 0.043 | 0.334 |
| BXD07 | 0.148 | 0.377 |
| BXD08 | 0.011 | 0.648 |
| BXD09 | -0.046 | 0.527 |
| CAST | 0.516 | 1.039 |
| CCcont | 0.07 | 0.082 |
| DS01 | 1.136 | 0.065 |
| DS02 | 0.726 | 1.022 |
| DS04 | 1.318 | -1.248 |
| DS0c | 0.662 | 1.095 |
| GP01 | 0.201 | -0.802 |
| GP02 | -0.748 | 1.79 |
| GP0c | -0.251 | -0.836 |
| NOD | 1.36 | 1.595 |
| NZO | 0.446 | 1.329 |
| PWK | 0.924 | 0.108 |
| H37Rv_KO_CtpC | 0.0 | -0.473 |
| H37Rv_KO_CtpD | -0.283 | 1.684 |
| H37Rv_KO_Rv1272 | -0.233 | 1.022 |
| H37Rv_KO_SugABC | 0.942 | 1.209 |
| H37Rv_KO_MbtN | 0.276 | 0.933 |
| Trans05 | -0.548 | 0.982 |
| macrophage_unactivated | -0.363 | -0.354 |
| IL1 | -0.053 | 0.308 |
| Rapamycin | -0.835 | -0.718 |
| Tcell | -0.606 | 0.45 |
| GMCSF | 0.166 | 0.774 |
| IFNab | 0.0 | -0.707 |
| IFNg | -0.048 | -0.299 |
| IFNg_GMCSF1 | -0.088 | -0.735 |
| Rv1432_day32 | -0.089 | 0.287 |
| Rv1565c_day32 | 0.351 | 0.602 |
| secA2_input | 0.095 | -0.146 |
| delta_Rv3594 | -0.159 | 0.912 |
| delta_Rv3717 | -0.458 | 0.0 |
| delta_Rv3811 | -0.607 | 0.049 |
| delta_Rv0954 | 0.522 | -0.23 |
| PonA1 | 0.658 | -0.039 |
| EccD1_KO | -0.178 | -1.059 |
| EspI_KO | -0.317 | -0.168 |
| PE35_KO | 0.271 | 0.904 |
| PPE68_KO | 0.266 | 0.442 |
| glycerol2 | 0.048 | 0.144 |
| lignocerate | 0.664 | -0.346 |
| oleate | -1.212 | -0.483 |
| phosphatidylcholine | -0.253 | -0.132 |
| acetate | 0.484 | -0.183 |
| glucAc | 0.575 | -0.565 |
| Rv0950ko | 0.425 | -0.808 |
| Rv1096ko | 0.392 | -0.808 |
| Rv3684ko | 0.747 | -0.783 |
| delta_otsA_trehalose | -0.535 | -0.838 |