Top 10 genes with highest correlation to Rv0057/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3711c/dnaQ | (cc=0.51) | info on Rv3711c/dnaQ |
| Rv3890c/esxC | (cc=0.4927) | info on Rv3890c/esxC |
| Rv2516c/- | (cc=0.478) | info on Rv2516c/- |
| Rv1112/- | (cc=0.4723) | info on Rv1112/- |
| Rv1435c/- | (cc=0.4436) | info on Rv1435c/- |
| Rv2927c/- | (cc=0.4324) | info on Rv2927c/- |
| Rv2373c/dnaJ2 | (cc=0.4318) | info on Rv2373c/dnaJ2 |
| Rv0364/- | (cc=0.424) | info on Rv0364/- |
| Rv3011c/gatA | (cc=0.4209) | info on Rv3011c/gatA |
| Rv0063/- | (cc=0.4173) | info on Rv0063/- |
Correlation of Rv0057/- with Rv3890c/esxC
Normalized LFCs for Rv0057/-:
(description and provenance of datasets)
| Rv0057/- | Rv3890c/esxC | |
| Fe_supp_jason_reseq | -0.033 | 0.167 |
| low_pH_jason_reseq | -1.032 | -1.772 |
| NO_jason_reseq | -1.297 | -1.431 |
| B6_jason_reseq | -0.873 | -0.962 |
| MHCII_jason_reseq | -0.572 | -0.082 |
| Isoniazid02 | -0.263 | -0.557 |
| Rifampicin4 | -1.819 | 0.547 |
| Ethambutol3 | -0.764 | 0.201 |
| Meropenem3 | -0.335 | 0.307 |
| Vancomycin16 | -0.565 | 0.019 |
| Rv2680_day32 | 0.371 | 1.065 |
| H37Rv_KO_MarP | 0.301 | 0.934 |
| hypoxia_3wks | -1.559 | -0.315 |
| hypoxia_6wks | -0.685 | 0.013 |
| glycerol | 0.341 | 0.872 |
| cholesterol | 0.789 | 0.548 |
| AJ | 0.792 | 0.259 |
| Bibs02 | 0.281 | 1.152 |
| Bibs02c | 1.699 | 1.667 |
| BL6 | -0.198 | -0.092 |
| BL6a | 1.507 | 0.946 |
| BXD01 | -0.416 | 0.628 |
| BXD010 | -0.258 | -0.126 |
| BXD011 | -0.376 | 0.447 |
| BXD03 | 0.514 | -0.294 |
| BXD04 | 0.19 | 0.882 |
| BXD05 | -0.646 | 0.224 |
| BXD06 | 0.42 | 0.205 |
| BXD07 | -0.19 | -0.549 |
| BXD08 | 0.024 | 1.135 |
| BXD09 | 0.237 | -0.056 |
| CAST | 0.529 | 0.846 |
| CCcont | 0.548 | 0.997 |
| DS01 | 1.235 | 0.919 |
| DS02 | 0.466 | 0.859 |
| DS04 | 0.17 | 1.873 |
| DS0c | 0.262 | 0.515 |
| GP01 | 0.255 | 0.265 |
| GP02 | -0.789 | -1.355 |
| GP0c | -0.966 | 0.404 |
| NOD | 1.709 | 0.849 |
| NZO | 0.627 | 0.223 |
| PWK | 1.722 | 1.398 |
| H37Rv_KO_CtpC | 0.059 | 0.65 |
| H37Rv_KO_CtpD | -0.121 | 0.185 |
| H37Rv_KO_Rv1272 | 0.799 | 0.877 |
| H37Rv_KO_SugABC | 0.12 | -0.039 |
| H37Rv_KO_MbtN | -0.058 | 0.338 |
| Trans05 | -0.049 | 0.344 |
| macrophage_unactivated | 0.404 | 1.739 |
| IL1 | -0.78 | -0.997 |
| Rapamycin | -0.807 | -0.319 |
| Tcell | 0.0 | 1.398 |
| GMCSF | 0.338 | 0.359 |
| IFNab | -0.248 | -0.088 |
| IFNg | 0.775 | -0.235 |
| IFNg_GMCSF1 | -0.17 | -0.229 |
| Rv1432_day32 | -0.485 | -0.098 |
| Rv1565c_day32 | -1.112 | 0.232 |
| secA2_input | -0.485 | -0.052 |
| delta_Rv3594 | 0.424 | 0.887 |
| delta_Rv3717 | 0.871 | 0.302 |
| delta_Rv3811 | 0.668 | 0.831 |
| delta_Rv0954 | 0.826 | 0.59 |
| PonA1 | 0.152 | -0.187 |
| EccD1_KO | -1.503 | -0.362 |
| EspI_KO | -0.841 | 0.137 |
| PE35_KO | -1.552 | -0.265 |
| PPE68_KO | -1.542 | -0.189 |
| glycerol2 | 0.105 | 0.149 |
| lignocerate | 0.15 | -0.429 |
| oleate | -1.021 | -0.067 |
| phosphatidylcholine | -0.398 | -0.482 |
| acetate | 0.884 | -1.222 |
| glucAc | 0.923 | 1.552 |
| Rv0950ko | 0.498 | -0.211 |
| Rv1096ko | 0.781 | -0.404 |
| Rv3684ko | 0.0 | -0.783 |
| delta_otsA_trehalose | -0.16 | -2.082 |