Top 10 genes with highest correlation to Rv0042c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2147c/- | (cc=0.5768) | info on Rv2147c/- |
| Rv2219/- | (cc=0.5704) | info on Rv2219/- |
| Rv1005c/pabB | (cc=0.5581) | info on Rv1005c/pabB |
| Rv0945/- | (cc=0.555) | info on Rv0945/- |
| Rv0698/- | (cc=0.5519) | info on Rv0698/- |
| Rv1987/- | (cc=0.547) | info on Rv1987/- |
| Rv0312/- | (cc=0.5331) | info on Rv0312/- |
| Rv2607/pdxH | (cc=0.5271) | info on Rv2607/pdxH |
| Rv1062/- | (cc=0.5185) | info on Rv1062/- |
| Rv0109/PE_PGRS1 | (cc=0.5114) | info on Rv0109/PE_PGRS1 |
Correlation of Rv0042c/- with Rv0312/-
Normalized LFCs for Rv0042c/-:
(description and provenance of datasets)
| Rv0042c/- | Rv0312/- | |
| Fe_supp_jason_reseq | -0.429 | 0.638 |
| low_pH_jason_reseq | 2.832 | 0.331 |
| NO_jason_reseq | -1.168 | -0.113 |
| B6_jason_reseq | -1.443 | 0.135 |
| MHCII_jason_reseq | 0.527 | 0.678 |
| Isoniazid02 | 0.24 | 0.533 |
| Rifampicin4 | -0.915 | -2.296 |
| Ethambutol3 | 1.484 | 0.942 |
| Meropenem3 | -0.53 | -0.386 |
| Vancomycin16 | -1.47 | -2.406 |
| Rv2680_day32 | 0.249 | -1.374 |
| H37Rv_KO_MarP | -1.381 | 0.181 |
| hypoxia_3wks | -2.703 | -1.467 |
| hypoxia_6wks | -2.955 | -0.867 |
| glycerol | 0.231 | 0.619 |
| cholesterol | -0.36 | 0.223 |
| AJ | -0.761 | -0.771 |
| Bibs02 | -0.319 | 0.686 |
| Bibs02c | -0.317 | 0.235 |
| BL6 | 2.042 | 0.49 |
| BL6a | 0.644 | 0.264 |
| BXD01 | 1.487 | -0.476 |
| BXD010 | 1.227 | 0.897 |
| BXD011 | -0.026 | 0.297 |
| BXD03 | 2.173 | 0.263 |
| BXD04 | 1.113 | -0.156 |
| BXD05 | 0.154 | -0.135 |
| BXD06 | 0.511 | -0.168 |
| BXD07 | 0.605 | -0.46 |
| BXD08 | 0.793 | -0.358 |
| BXD09 | 1.114 | -0.216 |
| CAST | 0.179 | 0.402 |
| CCcont | 2.186 | 0.746 |
| DS01 | -0.25 | -0.056 |
| DS02 | -0.54 | -0.274 |
| DS04 | -1.33 | -1.228 |
| DS0c | 1.141 | -0.052 |
| GP01 | 1.385 | -0.396 |
| GP02 | 0.271 | 0.255 |
| GP0c | 2.192 | -0.614 |
| NOD | -0.446 | -1.147 |
| NZO | -0.04 | -1.019 |
| PWK | 0.52 | -1.159 |
| H37Rv_KO_CtpC | 0.95 | -0.12 |
| H37Rv_KO_CtpD | 2.27 | -0.03 |
| H37Rv_KO_Rv1272 | 1.846 | -1.022 |
| H37Rv_KO_SugABC | -1.157 | 0.286 |
| H37Rv_KO_MbtN | 1.155 | -0.85 |
| Trans05 | 1.371 | -1.147 |
| macrophage_unactivated | 0.669 | -0.489 |
| IL1 | 0.05 | -0.658 |
| Rapamycin | -0.638 | 0.178 |
| Tcell | -0.176 | 0.094 |
| GMCSF | -0.549 | 0.227 |
| IFNab | -0.275 | -0.372 |
| IFNg | -1.539 | 0.0 |
| IFNg_GMCSF1 | -0.984 | -0.591 |
| Rv1432_day32 | 4.1 | 0.0 |
| Rv1565c_day32 | -0.415 | 0.0 |
| secA2_input | 0.484 | 0.0 |
| delta_Rv3594 | 2.183 | 0.646 |
| delta_Rv3717 | 2.034 | 0.505 |
| delta_Rv3811 | 1.828 | 0.752 |
| delta_Rv0954 | 0.766 | -0.115 |
| PonA1 | 0.856 | 0.653 |
| EccD1_KO | -0.895 | -1.016 |
| EspI_KO | -2.13 | -1.135 |
| PE35_KO | -0.356 | -1.228 |
| PPE68_KO | 0.403 | -0.921 |
| glycerol2 | 3.869 | 2.019 |
| lignocerate | 3.653 | 2.557 |
| oleate | -1.202 | -0.315 |
| phosphatidylcholine | 3.064 | 2.07 |
| acetate | 3.807 | 3.325 |
| glucAc | 3.201 | 2.617 |
| Rv0950ko | -0.476 | 1.668 |
| Rv1096ko | -2.063 | 0.875 |
| Rv3684ko | -0.252 | 0.684 |
| delta_otsA_trehalose | 0.739 | 0.079 |