Top 10 genes with highest correlation to Rv0042c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2147c/- | (cc=0.5768) | info on Rv2147c/- |
| Rv2219/- | (cc=0.5704) | info on Rv2219/- |
| Rv1005c/pabB | (cc=0.5581) | info on Rv1005c/pabB |
| Rv0945/- | (cc=0.555) | info on Rv0945/- |
| Rv0698/- | (cc=0.5519) | info on Rv0698/- |
| Rv1987/- | (cc=0.547) | info on Rv1987/- |
| Rv0312/- | (cc=0.5331) | info on Rv0312/- |
| Rv2607/pdxH | (cc=0.5271) | info on Rv2607/pdxH |
| Rv1062/- | (cc=0.5185) | info on Rv1062/- |
| Rv0109/PE_PGRS1 | (cc=0.5114) | info on Rv0109/PE_PGRS1 |
Correlation of Rv0042c/- with Rv0109/PE_PGRS1
Normalized LFCs for Rv0042c/-:
(description and provenance of datasets)
| Rv0042c/- | Rv0109/PE_PGRS1 | |
| Fe_supp_jason_reseq | -0.429 | -1.609 |
| low_pH_jason_reseq | 2.832 | 0.646 |
| NO_jason_reseq | -1.168 | -0.541 |
| B6_jason_reseq | -1.443 | -1.364 |
| MHCII_jason_reseq | 0.527 | -0.516 |
| Isoniazid02 | 0.24 | -0.626 |
| Rifampicin4 | -0.915 | -0.181 |
| Ethambutol3 | 1.484 | -0.054 |
| Meropenem3 | -0.53 | 0.026 |
| Vancomycin16 | -1.47 | -0.239 |
| Rv2680_day32 | 0.249 | 0.271 |
| H37Rv_KO_MarP | -1.381 | -0.349 |
| hypoxia_3wks | -2.703 | -0.367 |
| hypoxia_6wks | -2.955 | -0.731 |
| glycerol | 0.231 | -1.001 |
| cholesterol | -0.36 | -0.034 |
| AJ | -0.761 | 0.156 |
| Bibs02 | -0.319 | -0.535 |
| Bibs02c | -0.317 | -0.1 |
| BL6 | 2.042 | 1.203 |
| BL6a | 0.644 | 0.663 |
| BXD01 | 1.487 | 1.074 |
| BXD010 | 1.227 | 0.882 |
| BXD011 | -0.026 | 1.237 |
| BXD03 | 2.173 | 0.407 |
| BXD04 | 1.113 | 0.711 |
| BXD05 | 0.154 | 1.095 |
| BXD06 | 0.511 | 0.675 |
| BXD07 | 0.605 | 1.294 |
| BXD08 | 0.793 | 0.533 |
| BXD09 | 1.114 | 0.789 |
| CAST | 0.179 | 0.205 |
| CCcont | 2.186 | 1.465 |
| DS01 | -0.25 | -0.229 |
| DS02 | -0.54 | 0.372 |
| DS04 | -1.33 | 0.131 |
| DS0c | 1.141 | -0.211 |
| GP01 | 1.385 | -0.787 |
| GP02 | 0.271 | -0.705 |
| GP0c | 2.192 | 0.345 |
| NOD | -0.446 | -0.107 |
| NZO | -0.04 | 0.668 |
| PWK | 0.52 | -0.142 |
| H37Rv_KO_CtpC | 0.95 | -0.038 |
| H37Rv_KO_CtpD | 2.27 | 0.778 |
| H37Rv_KO_Rv1272 | 1.846 | 1.344 |
| H37Rv_KO_SugABC | -1.157 | 0.857 |
| H37Rv_KO_MbtN | 1.155 | -0.211 |
| Trans05 | 1.371 | 1.68 |
| macrophage_unactivated | 0.669 | 0.429 |
| IL1 | 0.05 | 0.184 |
| Rapamycin | -0.638 | -0.098 |
| Tcell | -0.176 | -0.489 |
| GMCSF | -0.549 | -0.084 |
| IFNab | -0.275 | 0.048 |
| IFNg | -1.539 | 0.246 |
| IFNg_GMCSF1 | -0.984 | 0.776 |
| Rv1432_day32 | 4.1 | 1.119 |
| Rv1565c_day32 | -0.415 | 0.115 |
| secA2_input | 0.484 | -0.045 |
| delta_Rv3594 | 2.183 | 1.127 |
| delta_Rv3717 | 2.034 | 1.333 |
| delta_Rv3811 | 1.828 | 0.909 |
| delta_Rv0954 | 0.766 | 0.721 |
| PonA1 | 0.856 | 0.705 |
| EccD1_KO | -0.895 | 1.089 |
| EspI_KO | -2.13 | -0.53 |
| PE35_KO | -0.356 | -0.403 |
| PPE68_KO | 0.403 | -0.288 |
| glycerol2 | 3.869 | 0.82 |
| lignocerate | 3.653 | 0.872 |
| oleate | -1.202 | 0.048 |
| phosphatidylcholine | 3.064 | 0.471 |
| acetate | 3.807 | 0.934 |
| glucAc | 3.201 | 1.169 |
| Rv0950ko | -0.476 | 1.022 |
| Rv1096ko | -2.063 | 0.582 |
| Rv3684ko | -0.252 | 0.796 |
| delta_otsA_trehalose | 0.739 | 0.536 |