Top 10 genes with highest correlation to Rv0039c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0631c/recC | (cc=0.5919) | info on Rv0631c/recC |
| Rv0377/- | (cc=0.5349) | info on Rv0377/- |
| Rv3480c/- | (cc=0.4585) | info on Rv3480c/- |
| Rv0797/- | (cc=0.4582) | info on Rv0797/- |
| Rv1681/moeX | (cc=0.4505) | info on Rv1681/moeX |
| Rv0470A/- | (cc=0.4348) | info on Rv0470A/- |
| Rv0447c/ufaA1 | (cc=0.4282) | info on Rv0447c/ufaA1 |
| Rv0400c/fadE7 | (cc=0.4256) | info on Rv0400c/fadE7 |
| Rv0847/lpqS | (cc=0.4244) | info on Rv0847/lpqS |
| Rv3655c/- | (cc=0.423) | info on Rv3655c/- |
Correlation of Rv0039c/- with Rv0470A/-
Normalized LFCs for Rv0039c/-:
(description and provenance of datasets)
| Rv0039c/- | Rv0470A/- | |
| Fe_supp_jason_reseq | -1.939 | -0.748 |
| low_pH_jason_reseq | 0.517 | -0.236 |
| NO_jason_reseq | -0.42 | -0.139 |
| B6_jason_reseq | 0.009 | 0.027 |
| MHCII_jason_reseq | -0.134 | 0.075 |
| Isoniazid02 | 0.304 | 1.019 |
| Rifampicin4 | 0.945 | 0.571 |
| Ethambutol3 | 0.698 | 0.776 |
| Meropenem3 | 0.429 | 1.85 |
| Vancomycin16 | 1.504 | 0.716 |
| Rv2680_day32 | -0.802 | -0.505 |
| H37Rv_KO_MarP | -0.597 | 0.686 |
| hypoxia_3wks | -0.502 | -0.415 |
| hypoxia_6wks | 0.0 | -1.401 |
| glycerol | -0.638 | -0.009 |
| cholesterol | -0.018 | -0.15 |
| AJ | -0.331 | -0.812 |
| Bibs02 | 0.264 | -0.099 |
| Bibs02c | -0.097 | 0.362 |
| BL6 | -0.453 | -1.052 |
| BL6a | -0.36 | -0.492 |
| BXD01 | -0.834 | -1.861 |
| BXD010 | -0.384 | -1.26 |
| BXD011 | -1.007 | -1.343 |
| BXD03 | -0.421 | -1.932 |
| BXD04 | -0.243 | -1.959 |
| BXD05 | 0.303 | -1.381 |
| BXD06 | -0.501 | -1.533 |
| BXD07 | 0.077 | -1.565 |
| BXD08 | -0.341 | -1.577 |
| BXD09 | 0.142 | -2.007 |
| CAST | 0.617 | 0.065 |
| CCcont | -0.359 | -0.641 |
| DS01 | 1.545 | 0.71 |
| DS02 | 0.562 | 0.714 |
| DS04 | 1.789 | 0.96 |
| DS0c | 1.369 | 0.658 |
| GP01 | -1.496 | -1.03 |
| GP02 | -2.318 | -0.776 |
| GP0c | -1.132 | -1.118 |
| NOD | -0.576 | 0.073 |
| NZO | 0.54 | -0.341 |
| PWK | 0.422 | -0.428 |
| H37Rv_KO_CtpC | -0.254 | -0.818 |
| H37Rv_KO_CtpD | 0.667 | 0.323 |
| H37Rv_KO_Rv1272 | 0.161 | -0.706 |
| H37Rv_KO_SugABC | 0.705 | -0.798 |
| H37Rv_KO_MbtN | -1.051 | -1.506 |
| Trans05 | -1.203 | -0.854 |
| macrophage_unactivated | -0.451 | -0.66 |
| IL1 | 0.065 | -0.46 |
| Rapamycin | 0.887 | -0.411 |
| Tcell | -0.169 | -0.593 |
| GMCSF | 0.713 | -0.232 |
| IFNab | -0.045 | -0.565 |
| IFNg | 0.107 | -0.802 |
| IFNg_GMCSF1 | 0.377 | -0.277 |
| Rv1432_day32 | -0.164 | -1.448 |
| Rv1565c_day32 | 0.0 | -0.329 |
| secA2_input | -0.052 | 0.534 |
| delta_Rv3594 | -1.103 | -1.834 |
| delta_Rv3717 | 0.43 | -1.651 |
| delta_Rv3811 | 0.296 | -1.517 |
| delta_Rv0954 | 1.337 | -0.099 |
| PonA1 | 0.322 | -0.293 |
| EccD1_KO | 0.553 | -0.753 |
| EspI_KO | 1.081 | -0.742 |
| PE35_KO | -0.554 | -0.633 |
| PPE68_KO | 0.515 | -0.909 |
| glycerol2 | -0.719 | 0.611 |
| lignocerate | -0.096 | 0.497 |
| oleate | -0.357 | 0.214 |
| phosphatidylcholine | -0.896 | 0.336 |
| acetate | -0.746 | -0.04 |
| glucAc | -0.52 | -0.321 |
| Rv0950ko | 0.377 | 1.113 |
| Rv1096ko | 1.294 | 0.893 |
| Rv3684ko | 1.533 | 0.678 |
| delta_otsA_trehalose | 1.756 | 0.027 |