Top 10 genes with highest correlation to Rv3892c/PPE69:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2340c/PE_PGRS39 | (cc=0.6054) | info on Rv2340c/PE_PGRS39 |
| Rv3728/- | (cc=0.526) | info on Rv3728/- |
| Rv1066/- | (cc=0.5115) | info on Rv1066/- |
| Rv1468c/PE_PGRS29 | (cc=0.4789) | info on Rv1468c/PE_PGRS29 |
| Rv2141c/- | (cc=0.4777) | info on Rv2141c/- |
| Rv3879c/espK | (cc=0.4721) | info on Rv3879c/espK |
| Rv3532/PPE61 | (cc=0.4668) | info on Rv3532/PPE61 |
| Rv0218/- | (cc=0.4667) | info on Rv0218/- |
| Rv0075/- | (cc=0.465) | info on Rv0075/- |
| Rv2265/- | (cc=0.4649) | info on Rv2265/- |
Correlation of Rv3892c/PPE69 with Rv0218/-
Normalized LFCs for Rv3892c/PPE69:
(description and provenance of datasets)
| Rv3892c/PPE69 | Rv0218/- | |
| Fe_supp_jason_reseq | 0.262 | 0.434 |
| low_pH_jason_reseq | -0.467 | -0.201 |
| NO_jason_reseq | -1.601 | 0.0 |
| B6_jason_reseq | 0.094 | 0.84 |
| MHCII_jason_reseq | -0.108 | 1.098 |
| Isoniazid02 | 2.267 | 1.369 |
| Rifampicin4 | 0.723 | 0.582 |
| Ethambutol3 | 2.274 | 0.991 |
| Meropenem3 | -0.126 | 0.0 |
| Vancomycin16 | 0.058 | 0.658 |
| Rv2680_day32 | -1.335 | -0.208 |
| H37Rv_KO_MarP | 0.555 | 0.203 |
| hypoxia_3wks | -0.658 | 0.251 |
| hypoxia_6wks | -0.912 | 0.106 |
| glycerol | 0.257 | 1.104 |
| cholesterol | 0.441 | 0.912 |
| AJ | 1.385 | 0.734 |
| Bibs02 | 0.911 | 0.09 |
| Bibs02c | 0.453 | 0.537 |
| BL6 | -0.247 | -0.272 |
| BL6a | 0.143 | 0.043 |
| BXD01 | -0.973 | -0.43 |
| BXD010 | -0.253 | -0.722 |
| BXD011 | -0.23 | 0.009 |
| BXD03 | 0.108 | -0.419 |
| BXD04 | 0.019 | -0.445 |
| BXD05 | -0.161 | 0.322 |
| BXD06 | -1.104 | -0.467 |
| BXD07 | -0.781 | -0.416 |
| BXD08 | 0.288 | -0.4 |
| BXD09 | -0.331 | -0.343 |
| CAST | 1.049 | 0.385 |
| CCcont | -0.578 | -0.716 |
| DS01 | 0.898 | 0.245 |
| DS02 | 1.054 | 0.792 |
| DS04 | 1.703 | 0.95 |
| DS0c | 1.092 | 0.641 |
| GP01 | 0.3 | -1.051 |
| GP02 | 0.482 | 0.232 |
| GP0c | -0.222 | -0.537 |
| NOD | 0.083 | 0.747 |
| NZO | 0.159 | -0.15 |
| PWK | 0.196 | 0.735 |
| H37Rv_KO_CtpC | 0.107 | -0.473 |
| H37Rv_KO_CtpD | 0.32 | -0.762 |
| H37Rv_KO_Rv1272 | 0.774 | 0.484 |
| H37Rv_KO_SugABC | -0.474 | 0.485 |
| H37Rv_KO_MbtN | -0.023 | -0.703 |
| Trans05 | 0.449 | -0.485 |
| macrophage_unactivated | -1.449 | -1.209 |
| IL1 | 0.341 | -0.11 |
| Rapamycin | -0.068 | -0.592 |
| Tcell | -0.45 | -0.811 |
| GMCSF | 0.058 | -0.296 |
| IFNab | -0.345 | -0.499 |
| IFNg | -0.029 | 0.187 |
| IFNg_GMCSF1 | -0.321 | -0.075 |
| Rv1432_day32 | -0.107 | 0.439 |
| Rv1565c_day32 | -0.959 | 1.077 |
| secA2_input | 0.653 | -0.421 |
| delta_Rv3594 | -0.291 | -0.272 |
| delta_Rv3717 | 0.283 | -0.152 |
| delta_Rv3811 | -0.269 | -0.18 |
| delta_Rv0954 | 0.77 | 0.469 |
| PonA1 | -0.241 | 0.372 |
| EccD1_KO | -0.372 | -0.365 |
| EspI_KO | -0.414 | -0.228 |
| PE35_KO | -0.764 | 0.193 |
| PPE68_KO | -0.214 | -0.221 |
| glycerol2 | 0.412 | -0.433 |
| lignocerate | 0.06 | -0.61 |
| oleate | 0.597 | 0.231 |
| phosphatidylcholine | 0.069 | -0.364 |
| acetate | 0.02 | -0.653 |
| glucAc | -0.762 | -0.818 |
| Rv0950ko | -0.106 | 0.0 |
| Rv1096ko | 0.0 | -0.271 |
| Rv3684ko | -0.609 | -0.295 |
| delta_otsA_trehalose | 1.319 | -0.376 |