Top 10 genes with highest correlation to Rv3892c/PPE69:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2340c/PE_PGRS39 | (cc=0.6054) | info on Rv2340c/PE_PGRS39 |
| Rv3728/- | (cc=0.526) | info on Rv3728/- |
| Rv1066/- | (cc=0.5115) | info on Rv1066/- |
| Rv1468c/PE_PGRS29 | (cc=0.4789) | info on Rv1468c/PE_PGRS29 |
| Rv2141c/- | (cc=0.4777) | info on Rv2141c/- |
| Rv3879c/espK | (cc=0.4721) | info on Rv3879c/espK |
| Rv3532/PPE61 | (cc=0.4668) | info on Rv3532/PPE61 |
| Rv0218/- | (cc=0.4667) | info on Rv0218/- |
| Rv0075/- | (cc=0.465) | info on Rv0075/- |
| Rv2265/- | (cc=0.4649) | info on Rv2265/- |
Correlation of Rv3892c/PPE69 with Rv0075/-
Normalized LFCs for Rv3892c/PPE69:
(description and provenance of datasets)
| Rv3892c/PPE69 | Rv0075/- | |
| Fe_supp_jason_reseq | 0.262 | -0.153 |
| low_pH_jason_reseq | -0.467 | -0.447 |
| NO_jason_reseq | -1.601 | 0.097 |
| B6_jason_reseq | 0.094 | 0.662 |
| MHCII_jason_reseq | -0.108 | 1.083 |
| Isoniazid02 | 2.267 | 0.825 |
| Rifampicin4 | 0.723 | 0.265 |
| Ethambutol3 | 2.274 | 1.492 |
| Meropenem3 | -0.126 | -0.273 |
| Vancomycin16 | 0.058 | -0.348 |
| Rv2680_day32 | -1.335 | -0.169 |
| H37Rv_KO_MarP | 0.555 | 0.46 |
| hypoxia_3wks | -0.658 | 0.255 |
| hypoxia_6wks | -0.912 | 0.75 |
| glycerol | 0.257 | -0.285 |
| cholesterol | 0.441 | 0.12 |
| AJ | 1.385 | -0.222 |
| Bibs02 | 0.911 | 0.481 |
| Bibs02c | 0.453 | 0.432 |
| BL6 | -0.247 | -0.236 |
| BL6a | 0.143 | 0.192 |
| BXD01 | -0.973 | -0.007 |
| BXD010 | -0.253 | -0.372 |
| BXD011 | -0.23 | -0.143 |
| BXD03 | 0.108 | -0.42 |
| BXD04 | 0.019 | -0.271 |
| BXD05 | -0.161 | -0.077 |
| BXD06 | -1.104 | 0.178 |
| BXD07 | -0.781 | -0.204 |
| BXD08 | 0.288 | -0.3 |
| BXD09 | -0.331 | -0.044 |
| CAST | 1.049 | 0.012 |
| CCcont | -0.578 | -0.505 |
| DS01 | 0.898 | 0.477 |
| DS02 | 1.054 | 0.022 |
| DS04 | 1.703 | 0.88 |
| DS0c | 1.092 | 0.83 |
| GP01 | 0.3 | -0.328 |
| GP02 | 0.482 | 1.227 |
| GP0c | -0.222 | -0.544 |
| NOD | 0.083 | 0.573 |
| NZO | 0.159 | -0.082 |
| PWK | 0.196 | -0.199 |
| H37Rv_KO_CtpC | 0.107 | -0.346 |
| H37Rv_KO_CtpD | 0.32 | 0.099 |
| H37Rv_KO_Rv1272 | 0.774 | 0.103 |
| H37Rv_KO_SugABC | -0.474 | -0.301 |
| H37Rv_KO_MbtN | -0.023 | -0.8 |
| Trans05 | 0.449 | 0.059 |
| macrophage_unactivated | -1.449 | -0.846 |
| IL1 | 0.341 | -0.392 |
| Rapamycin | -0.068 | 0.025 |
| Tcell | -0.45 | -0.14 |
| GMCSF | 0.058 | -0.576 |
| IFNab | -0.345 | -0.659 |
| IFNg | -0.029 | -0.329 |
| IFNg_GMCSF1 | -0.321 | -0.625 |
| Rv1432_day32 | -0.107 | -0.24 |
| Rv1565c_day32 | -0.959 | -0.324 |
| secA2_input | 0.653 | 0.412 |
| delta_Rv3594 | -0.291 | -0.875 |
| delta_Rv3717 | 0.283 | -0.357 |
| delta_Rv3811 | -0.269 | -0.669 |
| delta_Rv0954 | 0.77 | -0.199 |
| PonA1 | -0.241 | -0.28 |
| EccD1_KO | -0.372 | 0.086 |
| EspI_KO | -0.414 | 0.245 |
| PE35_KO | -0.764 | -0.026 |
| PPE68_KO | -0.214 | 0.355 |
| glycerol2 | 0.412 | -0.024 |
| lignocerate | 0.06 | -0.094 |
| oleate | 0.597 | 0.047 |
| phosphatidylcholine | 0.069 | -0.221 |
| acetate | 0.02 | -0.128 |
| glucAc | -0.762 | -0.542 |
| Rv0950ko | -0.106 | -0.431 |
| Rv1096ko | 0.0 | -0.486 |
| Rv3684ko | -0.609 | -0.141 |
| delta_otsA_trehalose | 1.319 | -0.064 |