Top 10 genes with highest correlation to Rv3860/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3384c/vapC46 | (cc=0.5503) | info on Rv3384c/vapC46 |
| Rv1196/PPE18 | (cc=0.4756) | info on Rv1196/PPE18 |
| Rv2173/idsA2 | (cc=0.4752) | info on Rv2173/idsA2 |
| Rv0860/fadB | (cc=0.4672) | info on Rv0860/fadB |
| Rv2289/cdh | (cc=0.438) | info on Rv2289/cdh |
| Rv1829/- | (cc=0.4365) | info on Rv1829/- |
| Rv1800/PPE28 | (cc=0.4269) | info on Rv1800/PPE28 |
| Rv2307B/- | (cc=0.4268) | info on Rv2307B/- |
| Rv2866/relG | (cc=0.4222) | info on Rv2866/relG |
| Rv1830/- | (cc=0.4197) | info on Rv1830/- |
Correlation of Rv3860/- with Rv3384c/vapC46
Normalized LFCs for Rv3860/-:
(description and provenance of datasets)
| Rv3860/- | Rv3384c/vapC46 | |
| Fe_supp_jason_reseq | -0.524 | -1.924 |
| low_pH_jason_reseq | -0.032 | -0.848 |
| NO_jason_reseq | -1.181 | -0.606 |
| B6_jason_reseq | -1.425 | -1.495 |
| MHCII_jason_reseq | -0.556 | -2.384 |
| Isoniazid02 | 1.045 | 0.313 |
| Rifampicin4 | 0.241 | 0.899 |
| Ethambutol3 | 1.488 | 0.624 |
| Meropenem3 | 0.22 | 0.648 |
| Vancomycin16 | 0.154 | 0.881 |
| Rv2680_day32 | -1.003 | -2.671 |
| H37Rv_KO_MarP | -0.301 | 0.667 |
| hypoxia_3wks | -0.08 | -0.65 |
| hypoxia_6wks | 0.317 | -2.334 |
| glycerol | 0.143 | -0.304 |
| cholesterol | 0.148 | 0.191 |
| AJ | 0.237 | 1.887 |
| Bibs02 | 1.065 | 1.09 |
| Bibs02c | 0.427 | -1.446 |
| BL6 | 0.172 | -1.546 |
| BL6a | 0.495 | -0.822 |
| BXD01 | -0.449 | -1.54 |
| BXD010 | 0.32 | -0.817 |
| BXD011 | 0.561 | -0.937 |
| BXD03 | 0.391 | 0.418 |
| BXD04 | -0.342 | -0.322 |
| BXD05 | 0.602 | 0.529 |
| BXD06 | -0.008 | -0.246 |
| BXD07 | -0.352 | 0.083 |
| BXD08 | 0.303 | -0.142 |
| BXD09 | -0.142 | 0.206 |
| CAST | -0.247 | -0.551 |
| CCcont | 0.489 | -0.087 |
| DS01 | 0.18 | 0.448 |
| DS02 | 0.0 | -0.4 |
| DS04 | 0.076 | -2.363 |
| DS0c | 0.255 | -0.726 |
| GP01 | -0.075 | 0.377 |
| GP02 | -0.785 | 0.404 |
| GP0c | -0.303 | 0.0 |
| NOD | -1.398 | -1.704 |
| NZO | 0.585 | 1.098 |
| PWK | -0.273 | 0.686 |
| H37Rv_KO_CtpC | 0.107 | 1.131 |
| H37Rv_KO_CtpD | 0.451 | -0.276 |
| H37Rv_KO_Rv1272 | 0.535 | 0.5 |
| H37Rv_KO_SugABC | 1.385 | 0.808 |
| H37Rv_KO_MbtN | 1.405 | 1.899 |
| Trans05 | 0.664 | -0.932 |
| macrophage_unactivated | -0.275 | 0.401 |
| IL1 | 0.033 | -0.656 |
| Rapamycin | 0.396 | 0.083 |
| Tcell | -0.505 | -0.85 |
| GMCSF | -0.309 | 0.634 |
| IFNab | 0.605 | 0.23 |
| IFNg | 0.358 | 0.802 |
| IFNg_GMCSF1 | -0.255 | -0.053 |
| Rv1432_day32 | 0.343 | -0.065 |
| Rv1565c_day32 | -0.049 | -0.599 |
| secA2_input | 0.047 | -0.728 |
| delta_Rv3594 | 1.375 | 0.665 |
| delta_Rv3717 | 0.726 | 0.437 |
| delta_Rv3811 | 0.699 | 1.132 |
| delta_Rv0954 | -0.134 | -0.222 |
| PonA1 | -0.12 | -1.07 |
| EccD1_KO | 0.589 | 0.77 |
| EspI_KO | 0.185 | 0.896 |
| PE35_KO | 0.19 | 0.335 |
| PPE68_KO | -0.058 | 0.086 |
| glycerol2 | -0.224 | -1.77 |
| lignocerate | 0.326 | 0.223 |
| oleate | -0.757 | -3.424 |
| phosphatidylcholine | -0.434 | -0.95 |
| acetate | 0.053 | 0.261 |
| glucAc | 0.208 | 0.216 |
| Rv0950ko | 0.072 | -0.929 |
| Rv1096ko | -0.47 | -1.285 |
| Rv3684ko | -0.92 | -1.205 |
| delta_otsA_trehalose | -1.221 | -1.541 |