Top 10 genes with highest correlation to Rv3852/hns:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0940c/- | (cc=0.5306) | info on Rv0940c/- |
| Rv1419/- | (cc=0.5277) | info on Rv1419/- |
| Rv0413/mutT3 | (cc=0.5067) | info on Rv0413/mutT3 |
| Rv0925c/- | (cc=0.4868) | info on Rv0925c/- |
| Rv3045/adhC | (cc=0.4859) | info on Rv3045/adhC |
| Rv2416c/eis | (cc=0.4785) | info on Rv2416c/eis |
| Rv2594c/ruvC | (cc=0.4645) | info on Rv2594c/ruvC |
| Rv0769/- | (cc=0.4594) | info on Rv0769/- |
| Rv3397c/phyA | (cc=0.4562) | info on Rv3397c/phyA |
| Rv0143c/- | (cc=0.4534) | info on Rv0143c/- |
Correlation of Rv3852/hns with Rv2594c/ruvC
Normalized LFCs for Rv3852/hns:
(description and provenance of datasets)
| Rv3852/hns | Rv2594c/ruvC | |
| Fe_supp_jason_reseq | 0.371 | 0.218 |
| low_pH_jason_reseq | 1.544 | 0.0 |
| NO_jason_reseq | 0.814 | 0.0 |
| B6_jason_reseq | -0.649 | 0.0 |
| MHCII_jason_reseq | -0.686 | 0.0 |
| Isoniazid02 | -4.201 | -0.351 |
| Rifampicin4 | -3.135 | -1.026 |
| Ethambutol3 | -2.566 | -0.461 |
| Meropenem3 | -2.542 | -0.289 |
| Vancomycin16 | -2.205 | -1.005 |
| Rv2680_day32 | -0.655 | 0.0 |
| H37Rv_KO_MarP | 0.337 | 0.0 |
| hypoxia_3wks | -2.46 | 0.0 |
| hypoxia_6wks | -0.752 | 0.0 |
| glycerol | -0.812 | 0.0 |
| cholesterol | -0.147 | 0.0 |
| AJ | -0.553 | 0.0 |
| Bibs02 | -1.256 | 0.0 |
| Bibs02c | -2.199 | 0.0 |
| BL6 | 1.264 | 0.0 |
| BL6a | -1.323 | 0.0 |
| BXD01 | -0.723 | 0.0 |
| BXD010 | -0.904 | 0.0 |
| BXD011 | -0.149 | 0.0 |
| BXD03 | -0.451 | 0.0 |
| BXD04 | 0.036 | 0.0 |
| BXD05 | 0.212 | 0.0 |
| BXD06 | -0.122 | 0.0 |
| BXD07 | 0.817 | 0.0 |
| BXD08 | 0.129 | 0.0 |
| BXD09 | -0.049 | 0.0 |
| CAST | -1.009 | 0.0 |
| CCcont | -0.168 | 0.733 |
| DS01 | -0.756 | 0.0 |
| DS02 | -1.068 | 0.0 |
| DS04 | 0.11 | 0.0 |
| DS0c | -1.815 | 0.0 |
| GP01 | -2.824 | 0.0 |
| GP02 | -2.161 | 0.0 |
| GP0c | -1.316 | 0.0 |
| NOD | 0.314 | 0.0 |
| NZO | -0.078 | 0.0 |
| PWK | -0.503 | 0.0 |
| H37Rv_KO_CtpC | -0.157 | 0.0 |
| H37Rv_KO_CtpD | -0.651 | 0.0 |
| H37Rv_KO_Rv1272 | 0.117 | 0.0 |
| H37Rv_KO_SugABC | -0.873 | 0.0 |
| H37Rv_KO_MbtN | -0.031 | 0.0 |
| Trans05 | -0.622 | 0.0 |
| macrophage_unactivated | -0.215 | 0.0 |
| IL1 | -1.026 | 0.0 |
| Rapamycin | -1.04 | 0.0 |
| Tcell | -1.307 | 0.0 |
| GMCSF | -0.333 | 0.0 |
| IFNab | -1.696 | 0.0 |
| IFNg | -0.425 | 0.0 |
| IFNg_GMCSF1 | -1.235 | 0.0 |
| Rv1432_day32 | -0.875 | 0.0 |
| Rv1565c_day32 | -0.577 | 0.0 |
| secA2_input | -0.513 | 0.412 |
| delta_Rv3594 | -0.078 | 0.211 |
| delta_Rv3717 | -0.209 | 0.0 |
| delta_Rv3811 | 0.346 | 0.0 |
| delta_Rv0954 | -1.014 | 0.99 |
| PonA1 | -0.591 | 0.304 |
| EccD1_KO | -0.299 | 0.0 |
| EspI_KO | -0.234 | -0.394 |
| PE35_KO | 0.248 | 0.703 |
| PPE68_KO | -0.234 | 0.0 |
| glycerol2 | 0.603 | 0.0 |
| lignocerate | 0.5 | 0.0 |
| oleate | -0.411 | 0.0 |
| phosphatidylcholine | 0.965 | 0.0 |
| acetate | 0.585 | 0.63 |
| glucAc | 0.301 | 0.0 |
| Rv0950ko | 1.384 | 0.38 |
| Rv1096ko | 0.769 | 0.38 |
| Rv3684ko | 1.991 | 0.789 |
| delta_otsA_trehalose | 0.353 | 1.482 |