Top 10 genes with highest correlation to Rv3848/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3666c/dppA | (cc=0.5065) | info on Rv3666c/dppA |
| Rv0988/- | (cc=0.5045) | info on Rv0988/- |
| Rv0244c/fadE5 | (cc=0.4953) | info on Rv0244c/fadE5 |
| Rv0155/pntAa | (cc=0.4693) | info on Rv0155/pntAa |
| Rv0135c/- | (cc=0.467) | info on Rv0135c/- |
| Rv1592c/- | (cc=0.441) | info on Rv1592c/- |
| Rv0157/pntB | (cc=0.4403) | info on Rv0157/pntB |
| Rv1638/uvrA | (cc=0.4382) | info on Rv1638/uvrA |
| Rv2680/- | (cc=0.4203) | info on Rv2680/- |
| Rv0986/- | (cc=0.419) | info on Rv0986/- |
Correlation of Rv3848/- with Rv3666c/dppA
Normalized LFCs for Rv3848/-:
(description and provenance of datasets)
| Rv3848/- | Rv3666c/dppA | |
| Fe_supp_jason_reseq | 1.149 | -0.234 |
| low_pH_jason_reseq | 1.074 | 2.946 |
| NO_jason_reseq | -6.0 | -0.822 |
| B6_jason_reseq | -5.365 | -1.61 |
| MHCII_jason_reseq | -4.86 | -1.855 |
| Isoniazid02 | 1.908 | -0.247 |
| Rifampicin4 | -0.585 | -0.146 |
| Ethambutol3 | 0.185 | -0.066 |
| Meropenem3 | -1.76 | 0.182 |
| Vancomycin16 | -3.104 | 0.0 |
| Rv2680_day32 | -1.454 | -0.898 |
| H37Rv_KO_MarP | -0.684 | 1.01 |
| hypoxia_3wks | -3.019 | 0.255 |
| hypoxia_6wks | -1.1 | -0.606 |
| glycerol | 0.705 | -0.108 |
| cholesterol | -0.672 | 1.357 |
| AJ | -2.131 | -0.255 |
| Bibs02 | -3.187 | -0.201 |
| Bibs02c | -0.846 | 1.094 |
| BL6 | -0.744 | 0.392 |
| BL6a | -0.86 | 0.839 |
| BXD01 | -0.918 | 0.458 |
| BXD010 | -1.522 | -0.069 |
| BXD011 | -1.297 | 0.186 |
| BXD03 | 0.373 | 0.0 |
| BXD04 | -0.397 | 0.124 |
| BXD05 | -1.302 | 0.616 |
| BXD06 | 0.447 | 0.656 |
| BXD07 | -1.41 | 0.203 |
| BXD08 | -1.665 | 0.0 |
| BXD09 | -1.67 | 0.328 |
| CAST | 2.983 | 0.632 |
| CCcont | 2.663 | 1.266 |
| DS01 | 0.857 | 1.235 |
| DS02 | -1.897 | 0.922 |
| DS04 | -0.038 | 1.733 |
| DS0c | -1.992 | -0.506 |
| GP01 | -1.721 | -0.715 |
| GP02 | -1.45 | -0.52 |
| GP0c | -2.266 | -0.942 |
| NOD | 1.583 | 0.789 |
| NZO | -1.832 | -0.6 |
| PWK | -0.429 | 0.374 |
| H37Rv_KO_CtpC | 0.973 | 0.379 |
| H37Rv_KO_CtpD | 0.773 | 0.241 |
| H37Rv_KO_Rv1272 | -1.049 | 0.738 |
| H37Rv_KO_SugABC | -0.661 | -0.446 |
| H37Rv_KO_MbtN | -0.129 | -0.55 |
| Trans05 | 0.933 | 0.876 |
| macrophage_unactivated | 0.164 | 0.915 |
| IL1 | -2.515 | 0.59 |
| Rapamycin | -1.329 | 0.316 |
| Tcell | 0.495 | 1.085 |
| GMCSF | -0.449 | 0.137 |
| IFNab | 1.255 | -0.336 |
| IFNg | -3.127 | 0.275 |
| IFNg_GMCSF1 | -1.593 | 1.668 |
| Rv1432_day32 | -3.388 | 0.0 |
| Rv1565c_day32 | -0.218 | -0.725 |
| secA2_input | 1.819 | 0.504 |
| delta_Rv3594 | -1.911 | -0.788 |
| delta_Rv3717 | -2.991 | -0.927 |
| delta_Rv3811 | -2.098 | -0.766 |
| delta_Rv0954 | -1.477 | 0.178 |
| PonA1 | -0.165 | 0.159 |
| EccD1_KO | -1.615 | 1.365 |
| EspI_KO | -0.878 | 0.779 |
| PE35_KO | 0.0 | 1.587 |
| PPE68_KO | 0.886 | 1.181 |
| glycerol2 | -0.028 | 0.708 |
| lignocerate | -2.365 | 0.615 |
| oleate | -2.753 | -0.44 |
| phosphatidylcholine | -0.331 | 0.84 |
| acetate | 0.529 | 0.612 |
| glucAc | 0.262 | 0.453 |
| Rv0950ko | 0.0 | -1.007 |
| Rv1096ko | -3.553 | -0.311 |
| Rv3684ko | -2.581 | -1.755 |
| delta_otsA_trehalose | 1.01 | 2.069 |