Top 10 genes with highest correlation to Rv3821/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3823c/mmpL8 | (cc=0.8017) | info on Rv3823c/mmpL8 |
| Rv0644c/mmaA2 | (cc=0.6431) | info on Rv0644c/mmaA2 |
| Rv0473/- | (cc=0.614) | info on Rv0473/- |
| Rv1058/fadD14 | (cc=0.6105) | info on Rv1058/fadD14 |
| Rv0502/- | (cc=0.6044) | info on Rv0502/- |
| Rv1640c/lysX | (cc=0.596) | info on Rv1640c/lysX |
| Rv1008/tatD | (cc=0.5932) | info on Rv1008/tatD |
| Rv1543/- | (cc=0.593) | info on Rv1543/- |
| Rv3146/nuoB | (cc=0.5849) | info on Rv3146/nuoB |
| Rv0181c/- | (cc=0.584) | info on Rv0181c/- |
Correlation of Rv3821/- with Rv1640c/lysX
Normalized LFCs for Rv3821/-:
(description and provenance of datasets)
| Rv3821/- | Rv1640c/lysX | |
| Fe_supp_jason_reseq | 0.204 | 0.77 |
| low_pH_jason_reseq | 0.361 | -1.434 |
| NO_jason_reseq | 1.334 | -0.058 |
| B6_jason_reseq | -1.143 | 1.258 |
| MHCII_jason_reseq | -0.348 | 0.159 |
| Isoniazid02 | 0.016 | -1.263 |
| Rifampicin4 | 0.563 | -3.187 |
| Ethambutol3 | -0.344 | -2.24 |
| Meropenem3 | 1.73 | 0.879 |
| Vancomycin16 | 0.653 | -2.303 |
| Rv2680_day32 | 3.832 | 1.078 |
| H37Rv_KO_MarP | -0.571 | -2.764 |
| hypoxia_3wks | -0.514 | 4.366 |
| hypoxia_6wks | 0.908 | 3.111 |
| glycerol | -0.23 | -0.42 |
| cholesterol | 0.042 | -0.564 |
| AJ | -0.447 | -1.642 |
| Bibs02 | 0.514 | -0.498 |
| Bibs02c | 1.05 | 0.899 |
| BL6 | 2.286 | 0.906 |
| BL6a | 2.042 | 1.69 |
| BXD01 | 2.706 | 2.01 |
| BXD010 | 2.187 | 1.596 |
| BXD011 | 2.819 | 1.594 |
| BXD03 | 1.409 | 0.98 |
| BXD04 | 1.611 | 1.294 |
| BXD05 | 2.385 | 1.265 |
| BXD06 | 2.108 | 1.635 |
| BXD07 | 2.655 | 1.674 |
| BXD08 | 1.878 | 2.286 |
| BXD09 | 3.365 | 2.565 |
| CAST | -1.88 | -2.147 |
| CCcont | 1.367 | 1.12 |
| DS01 | 1.008 | 0.195 |
| DS02 | 0.871 | 0.247 |
| DS04 | 0.573 | 0.854 |
| DS0c | 1.116 | -0.115 |
| GP01 | 0.892 | 1.087 |
| GP02 | 0.016 | 1.427 |
| GP0c | 1.028 | 1.205 |
| NOD | -0.067 | -1.515 |
| NZO | 0.256 | -0.932 |
| PWK | -0.622 | -1.829 |
| H37Rv_KO_CtpC | 0.766 | 1.204 |
| H37Rv_KO_CtpD | 1.965 | 0.694 |
| H37Rv_KO_Rv1272 | 2.215 | 1.286 |
| H37Rv_KO_SugABC | 1.93 | 1.294 |
| H37Rv_KO_MbtN | 2.409 | 2.599 |
| Trans05 | 2.097 | 1.806 |
| macrophage_unactivated | -0.925 | -2.358 |
| IL1 | -2.684 | -1.465 |
| Rapamycin | -1.264 | -1.645 |
| Tcell | -2.434 | -1.147 |
| GMCSF | -1.434 | -1.719 |
| IFNab | 0.958 | -0.293 |
| IFNg | -1.922 | -0.919 |
| IFNg_GMCSF1 | -1.596 | -2.077 |
| Rv1432_day32 | 6.0 | 2.379 |
| Rv1565c_day32 | -1.827 | -2.854 |
| secA2_input | -0.864 | 0.864 |
| delta_Rv3594 | 0.739 | 1.628 |
| delta_Rv3717 | 2.095 | 3.157 |
| delta_Rv3811 | 1.447 | 1.46 |
| delta_Rv0954 | 0.062 | -0.261 |
| PonA1 | -0.208 | -0.856 |
| EccD1_KO | -0.816 | -1.332 |
| EspI_KO | -0.374 | -1.557 |
| PE35_KO | -0.799 | -2.15 |
| PPE68_KO | -0.761 | -1.296 |
| glycerol2 | 2.208 | -0.744 |
| lignocerate | 0.826 | -1.006 |
| oleate | 2.711 | -2.925 |
| phosphatidylcholine | 0.458 | -1.678 |
| acetate | 0.168 | 0.271 |
| glucAc | 0.249 | 0.236 |
| Rv0950ko | 0.467 | -1.128 |
| Rv1096ko | 0.404 | 0.093 |
| Rv3684ko | 2.826 | 1.055 |
| delta_otsA_trehalose | -0.335 | -0.468 |