Top 10 genes with highest correlation to Rv3821/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3823c/mmpL8 | (cc=0.8017) | info on Rv3823c/mmpL8 |
| Rv0644c/mmaA2 | (cc=0.6431) | info on Rv0644c/mmaA2 |
| Rv0473/- | (cc=0.614) | info on Rv0473/- |
| Rv1058/fadD14 | (cc=0.6105) | info on Rv1058/fadD14 |
| Rv0502/- | (cc=0.6044) | info on Rv0502/- |
| Rv1640c/lysX | (cc=0.596) | info on Rv1640c/lysX |
| Rv1008/tatD | (cc=0.5932) | info on Rv1008/tatD |
| Rv1543/- | (cc=0.593) | info on Rv1543/- |
| Rv3146/nuoB | (cc=0.5849) | info on Rv3146/nuoB |
| Rv0181c/- | (cc=0.584) | info on Rv0181c/- |
Correlation of Rv3821/- with Rv3823c/mmpL8
Normalized LFCs for Rv3821/-:
(description and provenance of datasets)
| Rv3821/- | Rv3823c/mmpL8 | |
| Fe_supp_jason_reseq | 0.204 | 0.636 |
| low_pH_jason_reseq | 0.361 | 1.265 |
| NO_jason_reseq | 1.334 | 0.929 |
| B6_jason_reseq | -1.143 | -2.255 |
| MHCII_jason_reseq | -0.348 | -1.75 |
| Isoniazid02 | 0.016 | -1.395 |
| Rifampicin4 | 0.563 | -0.485 |
| Ethambutol3 | -0.344 | -0.781 |
| Meropenem3 | 1.73 | -0.795 |
| Vancomycin16 | 0.653 | -0.825 |
| Rv2680_day32 | 3.832 | 2.354 |
| H37Rv_KO_MarP | -0.571 | -0.038 |
| hypoxia_3wks | -0.514 | -2.751 |
| hypoxia_6wks | 0.908 | -1.967 |
| glycerol | -0.23 | -0.607 |
| cholesterol | 0.042 | -0.492 |
| AJ | -0.447 | -1.819 |
| Bibs02 | 0.514 | -0.55 |
| Bibs02c | 1.05 | -0.062 |
| BL6 | 2.286 | 1.483 |
| BL6a | 2.042 | 1.679 |
| BXD01 | 2.706 | 2.137 |
| BXD010 | 2.187 | 1.589 |
| BXD011 | 2.819 | 2.276 |
| BXD03 | 1.409 | 1.512 |
| BXD04 | 1.611 | 2.143 |
| BXD05 | 2.385 | 1.969 |
| BXD06 | 2.108 | 1.823 |
| BXD07 | 2.655 | 2.074 |
| BXD08 | 1.878 | 1.161 |
| BXD09 | 3.365 | 2.705 |
| CAST | -1.88 | -1.805 |
| CCcont | 1.367 | 1.968 |
| DS01 | 1.008 | -1.105 |
| DS02 | 0.871 | -0.922 |
| DS04 | 0.573 | -0.822 |
| DS0c | 1.116 | 0.402 |
| GP01 | 0.892 | 1.7 |
| GP02 | 0.016 | 2.128 |
| GP0c | 1.028 | 1.659 |
| NOD | -0.067 | -1.627 |
| NZO | 0.256 | -1.332 |
| PWK | -0.622 | -1.795 |
| H37Rv_KO_CtpC | 0.766 | 1.153 |
| H37Rv_KO_CtpD | 1.965 | 1.184 |
| H37Rv_KO_Rv1272 | 2.215 | 1.787 |
| H37Rv_KO_SugABC | 1.93 | 0.787 |
| H37Rv_KO_MbtN | 2.409 | 2.801 |
| Trans05 | 2.097 | 2.087 |
| macrophage_unactivated | -0.925 | -0.489 |
| IL1 | -2.684 | -0.709 |
| Rapamycin | -1.264 | -0.172 |
| Tcell | -2.434 | -2.167 |
| GMCSF | -1.434 | -1.22 |
| IFNab | 0.958 | 0.877 |
| IFNg | -1.922 | -2.061 |
| IFNg_GMCSF1 | -1.596 | -1.612 |
| Rv1432_day32 | 6.0 | 3.75 |
| Rv1565c_day32 | -1.827 | -1.339 |
| secA2_input | -0.864 | -0.207 |
| delta_Rv3594 | 0.739 | 0.072 |
| delta_Rv3717 | 2.095 | 1.039 |
| delta_Rv3811 | 1.447 | 0.341 |
| delta_Rv0954 | 0.062 | -0.709 |
| PonA1 | -0.208 | -0.851 |
| EccD1_KO | -0.816 | 0.329 |
| EspI_KO | -0.374 | 0.054 |
| PE35_KO | -0.799 | -0.98 |
| PPE68_KO | -0.761 | -0.406 |
| glycerol2 | 2.208 | 0.657 |
| lignocerate | 0.826 | -0.293 |
| oleate | 2.711 | 1.418 |
| phosphatidylcholine | 0.458 | -0.161 |
| acetate | 0.168 | -0.191 |
| glucAc | 0.249 | 0.0 |
| Rv0950ko | 0.467 | -0.504 |
| Rv1096ko | 0.404 | 0.075 |
| Rv3684ko | 2.826 | 2.397 |
| delta_otsA_trehalose | -0.335 | -0.64 |