Top 10 genes with highest correlation to Rv3818/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1111c/- | (cc=0.7343) | info on Rv1111c/- |
| Rv3050c/- | (cc=0.7335) | info on Rv3050c/- |
| Rv2190c/- | (cc=0.7001) | info on Rv2190c/- |
| Rv3150/nuoF | (cc=0.6963) | info on Rv3150/nuoF |
| Rv0309/- | (cc=0.6875) | info on Rv0309/- |
| Rv3152/nuoH | (cc=0.673) | info on Rv3152/nuoH |
| Rv0502/- | (cc=0.6631) | info on Rv0502/- |
| Rv0929/pstC2 | (cc=0.6579) | info on Rv0929/pstC2 |
| Rv1831/- | (cc=0.6505) | info on Rv1831/- |
| Rv1640c/lysX | (cc=0.6474) | info on Rv1640c/lysX |
Correlation of Rv3818/- with Rv3050c/-
Normalized LFCs for Rv3818/-:
(description and provenance of datasets)
| Rv3818/- | Rv3050c/- | |
| Fe_supp_jason_reseq | -0.103 | -1.053 |
| low_pH_jason_reseq | -1.643 | 1.193 |
| NO_jason_reseq | -0.121 | 0.522 |
| B6_jason_reseq | -3.085 | -2.547 |
| MHCII_jason_reseq | -2.252 | -1.955 |
| Isoniazid02 | 1.234 | -0.063 |
| Rifampicin4 | -3.579 | -2.594 |
| Ethambutol3 | 0.377 | -0.612 |
| Meropenem3 | -0.771 | -0.918 |
| Vancomycin16 | -3.321 | -1.496 |
| Rv2680_day32 | 0.796 | 1.932 |
| H37Rv_KO_MarP | -2.515 | 0.906 |
| hypoxia_3wks | 2.592 | 1.611 |
| hypoxia_6wks | 2.946 | 2.7 |
| glycerol | -0.791 | 1.104 |
| cholesterol | 0.645 | -0.098 |
| AJ | -1.837 | 0.541 |
| Bibs02 | 0.474 | 0.115 |
| Bibs02c | 0.067 | 0.258 |
| BL6 | 1.975 | 2.934 |
| BL6a | 1.897 | 4.475 |
| BXD01 | 1.939 | 3.241 |
| BXD010 | 3.057 | 3.787 |
| BXD011 | 2.413 | 5.572 |
| BXD03 | 3.807 | 3.365 |
| BXD04 | 2.431 | 2.343 |
| BXD05 | 2.693 | 3.473 |
| BXD06 | 2.991 | 3.983 |
| BXD07 | 2.302 | 3.042 |
| BXD08 | 1.691 | 3.65 |
| BXD09 | 2.345 | 4.687 |
| CAST | -0.794 | -0.501 |
| CCcont | 3.269 | 2.452 |
| DS01 | 0.842 | -0.926 |
| DS02 | -0.072 | -0.852 |
| DS04 | 2.485 | 2.503 |
| DS0c | 0.966 | 0.616 |
| GP01 | 0.747 | 3.843 |
| GP02 | 0.829 | 1.738 |
| GP0c | 1.295 | 3.849 |
| NOD | -0.88 | -0.151 |
| NZO | -1.087 | -0.433 |
| PWK | -0.132 | -0.274 |
| H37Rv_KO_CtpC | 2.081 | 1.177 |
| H37Rv_KO_CtpD | 1.548 | 1.634 |
| H37Rv_KO_Rv1272 | 1.572 | 3.492 |
| H37Rv_KO_SugABC | 1.297 | 4.142 |
| H37Rv_KO_MbtN | 4.543 | 2.344 |
| Trans05 | 2.32 | 4.016 |
| macrophage_unactivated | 0.739 | 0.063 |
| IL1 | -0.341 | 0.291 |
| Rapamycin | 0.095 | 1.019 |
| Tcell | 0.443 | 2.255 |
| GMCSF | 0.51 | -0.573 |
| IFNab | 1.59 | 0.599 |
| IFNg | 1.114 | -1.227 |
| IFNg_GMCSF1 | -0.641 | -0.61 |
| Rv1432_day32 | 2.214 | 5.592 |
| Rv1565c_day32 | 0.218 | 0.458 |
| secA2_input | -1.506 | 0.321 |
| delta_Rv3594 | 0.017 | 1.42 |
| delta_Rv3717 | 1.251 | 3.259 |
| delta_Rv3811 | 0.858 | 0.932 |
| delta_Rv0954 | -2.768 | -1.765 |
| PonA1 | -0.682 | -1.855 |
| EccD1_KO | -0.826 | -2.072 |
| EspI_KO | -0.245 | -3.274 |
| PE35_KO | 0.324 | -1.613 |
| PPE68_KO | -0.275 | -1.261 |
| glycerol2 | -0.738 | -3.636 |
| lignocerate | -1.76 | -2.568 |
| oleate | -0.364 | -3.374 |
| phosphatidylcholine | -2.681 | -3.892 |
| acetate | 0.188 | -1.584 |
| glucAc | 0.06 | -0.723 |
| Rv0950ko | -1.426 | -0.874 |
| Rv1096ko | -0.434 | -1.384 |
| Rv3684ko | -0.472 | 1.952 |
| delta_otsA_trehalose | -1.157 | -0.519 |