Top 10 genes with highest correlation to Rv3818/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1111c/- | (cc=0.7343) | info on Rv1111c/- |
| Rv3050c/- | (cc=0.7335) | info on Rv3050c/- |
| Rv2190c/- | (cc=0.7001) | info on Rv2190c/- |
| Rv3150/nuoF | (cc=0.6963) | info on Rv3150/nuoF |
| Rv0309/- | (cc=0.6875) | info on Rv0309/- |
| Rv3152/nuoH | (cc=0.673) | info on Rv3152/nuoH |
| Rv0502/- | (cc=0.6631) | info on Rv0502/- |
| Rv0929/pstC2 | (cc=0.6579) | info on Rv0929/pstC2 |
| Rv1831/- | (cc=0.6505) | info on Rv1831/- |
| Rv1640c/lysX | (cc=0.6474) | info on Rv1640c/lysX |
Correlation of Rv3818/- with Rv1640c/lysX
Normalized LFCs for Rv3818/-:
(description and provenance of datasets)
| Rv3818/- | Rv1640c/lysX | |
| Fe_supp_jason_reseq | -0.103 | 0.77 |
| low_pH_jason_reseq | -1.643 | -1.434 |
| NO_jason_reseq | -0.121 | -0.058 |
| B6_jason_reseq | -3.085 | 1.258 |
| MHCII_jason_reseq | -2.252 | 0.159 |
| Isoniazid02 | 1.234 | -1.263 |
| Rifampicin4 | -3.579 | -3.187 |
| Ethambutol3 | 0.377 | -2.24 |
| Meropenem3 | -0.771 | 0.879 |
| Vancomycin16 | -3.321 | -2.303 |
| Rv2680_day32 | 0.796 | 1.078 |
| H37Rv_KO_MarP | -2.515 | -2.764 |
| hypoxia_3wks | 2.592 | 4.366 |
| hypoxia_6wks | 2.946 | 3.111 |
| glycerol | -0.791 | -0.42 |
| cholesterol | 0.645 | -0.564 |
| AJ | -1.837 | -1.642 |
| Bibs02 | 0.474 | -0.498 |
| Bibs02c | 0.067 | 0.899 |
| BL6 | 1.975 | 0.906 |
| BL6a | 1.897 | 1.69 |
| BXD01 | 1.939 | 2.01 |
| BXD010 | 3.057 | 1.596 |
| BXD011 | 2.413 | 1.594 |
| BXD03 | 3.807 | 0.98 |
| BXD04 | 2.431 | 1.294 |
| BXD05 | 2.693 | 1.265 |
| BXD06 | 2.991 | 1.635 |
| BXD07 | 2.302 | 1.674 |
| BXD08 | 1.691 | 2.286 |
| BXD09 | 2.345 | 2.565 |
| CAST | -0.794 | -2.147 |
| CCcont | 3.269 | 1.12 |
| DS01 | 0.842 | 0.195 |
| DS02 | -0.072 | 0.247 |
| DS04 | 2.485 | 0.854 |
| DS0c | 0.966 | -0.115 |
| GP01 | 0.747 | 1.087 |
| GP02 | 0.829 | 1.427 |
| GP0c | 1.295 | 1.205 |
| NOD | -0.88 | -1.515 |
| NZO | -1.087 | -0.932 |
| PWK | -0.132 | -1.829 |
| H37Rv_KO_CtpC | 2.081 | 1.204 |
| H37Rv_KO_CtpD | 1.548 | 0.694 |
| H37Rv_KO_Rv1272 | 1.572 | 1.286 |
| H37Rv_KO_SugABC | 1.297 | 1.294 |
| H37Rv_KO_MbtN | 4.543 | 2.599 |
| Trans05 | 2.32 | 1.806 |
| macrophage_unactivated | 0.739 | -2.358 |
| IL1 | -0.341 | -1.465 |
| Rapamycin | 0.095 | -1.645 |
| Tcell | 0.443 | -1.147 |
| GMCSF | 0.51 | -1.719 |
| IFNab | 1.59 | -0.293 |
| IFNg | 1.114 | -0.919 |
| IFNg_GMCSF1 | -0.641 | -2.077 |
| Rv1432_day32 | 2.214 | 2.379 |
| Rv1565c_day32 | 0.218 | -2.854 |
| secA2_input | -1.506 | 0.864 |
| delta_Rv3594 | 0.017 | 1.628 |
| delta_Rv3717 | 1.251 | 3.157 |
| delta_Rv3811 | 0.858 | 1.46 |
| delta_Rv0954 | -2.768 | -0.261 |
| PonA1 | -0.682 | -0.856 |
| EccD1_KO | -0.826 | -1.332 |
| EspI_KO | -0.245 | -1.557 |
| PE35_KO | 0.324 | -2.15 |
| PPE68_KO | -0.275 | -1.296 |
| glycerol2 | -0.738 | -0.744 |
| lignocerate | -1.76 | -1.006 |
| oleate | -0.364 | -2.925 |
| phosphatidylcholine | -2.681 | -1.678 |
| acetate | 0.188 | 0.271 |
| glucAc | 0.06 | 0.236 |
| Rv0950ko | -1.426 | -1.128 |
| Rv1096ko | -0.434 | 0.093 |
| Rv3684ko | -0.472 | 1.055 |
| delta_otsA_trehalose | -1.157 | -0.468 |