Top 10 genes with highest correlation to Rv3796/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1500/- | (cc=0.687) | info on Rv1500/- |
| Rv2430c/PPE41 | (cc=0.6505) | info on Rv2430c/PPE41 |
| Rv3142c/- | (cc=0.6429) | info on Rv3142c/- |
| Rv0469/umaA | (cc=0.6316) | info on Rv0469/umaA |
| Rv2735c/- | (cc=0.6085) | info on Rv2735c/- |
| Rv1918c/PPE35 | (cc=0.5988) | info on Rv1918c/PPE35 |
| Rv0305c/PPE6 | (cc=0.5975) | info on Rv0305c/PPE6 |
| Rv1059/- | (cc=0.5901) | info on Rv1059/- |
| Rv3156/nuoL | (cc=0.5858) | info on Rv3156/nuoL |
| Rv0642c/mmaA4 | (cc=0.5714) | info on Rv0642c/mmaA4 |
Correlation of Rv3796/- with Rv0642c/mmaA4
Normalized LFCs for Rv3796/-:
(description and provenance of datasets)
| Rv3796/- | Rv0642c/mmaA4 | |
| Fe_supp_jason_reseq | 0.216 | 1.547 |
| low_pH_jason_reseq | -0.253 | 2.202 |
| NO_jason_reseq | -0.063 | 2.678 |
| B6_jason_reseq | -0.018 | -2.886 |
| MHCII_jason_reseq | -0.072 | -1.687 |
| Isoniazid02 | -0.361 | -1.333 |
| Rifampicin4 | 0.623 | -1.565 |
| Ethambutol3 | -0.165 | -2.112 |
| Meropenem3 | 0.966 | -1.815 |
| Vancomycin16 | 0.085 | -6.0 |
| Rv2680_day32 | -0.562 | -0.359 |
| H37Rv_KO_MarP | 0.477 | 0.571 |
| hypoxia_3wks | 0.0 | -0.937 |
| hypoxia_6wks | -0.198 | 3.548 |
| glycerol | -0.48 | 1.556 |
| cholesterol | -0.036 | -0.145 |
| AJ | 1.324 | 0.585 |
| Bibs02 | -0.091 | 0.717 |
| Bibs02c | 0.897 | 2.877 |
| BL6 | 0.714 | 2.544 |
| BL6a | 1.187 | 3.946 |
| BXD01 | 0.694 | 4.224 |
| BXD010 | 0.944 | 4.186 |
| BXD011 | 0.969 | 6.0 |
| BXD03 | 0.803 | 4.026 |
| BXD04 | 0.849 | 3.598 |
| BXD05 | 1.394 | 4.7 |
| BXD06 | 0.664 | 5.627 |
| BXD07 | 0.75 | 4.784 |
| BXD08 | 0.98 | 5.896 |
| BXD09 | 0.971 | 4.223 |
| CAST | 0.552 | -0.23 |
| CCcont | 0.396 | 5.608 |
| DS01 | 0.392 | -0.236 |
| DS02 | 0.361 | -0.217 |
| DS04 | 0.564 | 2.617 |
| DS0c | 0.811 | -0.217 |
| GP01 | 1.283 | 6.0 |
| GP02 | 0.027 | 3.274 |
| GP0c | 0.613 | 6.0 |
| NOD | 1.059 | 0.0 |
| NZO | 1.195 | -0.199 |
| PWK | 0.594 | 0.342 |
| H37Rv_KO_CtpC | 0.521 | 4.153 |
| H37Rv_KO_CtpD | 0.584 | 1.805 |
| H37Rv_KO_Rv1272 | 1.414 | 4.035 |
| H37Rv_KO_SugABC | 0.936 | 1.362 |
| H37Rv_KO_MbtN | 0.828 | 6.0 |
| Trans05 | 0.764 | 4.713 |
| macrophage_unactivated | 0.527 | -3.595 |
| IL1 | 0.024 | 0.297 |
| Rapamycin | 0.295 | -0.706 |
| Tcell | 0.124 | -0.124 |
| GMCSF | -0.04 | -3.126 |
| IFNab | -0.045 | -0.883 |
| IFNg | -0.104 | -4.153 |
| IFNg_GMCSF1 | 0.189 | -5.477 |
| Rv1432_day32 | -0.269 | -0.98 |
| Rv1565c_day32 | 0.374 | -1.21 |
| secA2_input | 0.302 | 0.424 |
| delta_Rv3594 | 0.211 | 1.768 |
| delta_Rv3717 | 0.356 | 3.284 |
| delta_Rv3811 | 0.104 | 1.646 |
| delta_Rv0954 | 0.746 | -2.158 |
| PonA1 | 0.28 | -6.0 |
| EccD1_KO | -0.335 | -6.0 |
| EspI_KO | -0.73 | -6.0 |
| PE35_KO | -0.298 | -6.0 |
| PPE68_KO | -0.352 | -6.0 |
| glycerol2 | 0.235 | -1.684 |
| lignocerate | 0.078 | -1.464 |
| oleate | 0.586 | -1.167 |
| phosphatidylcholine | 0.246 | -1.683 |
| acetate | -0.229 | -1.561 |
| glucAc | -0.347 | -0.451 |
| Rv0950ko | 0.057 | -3.98 |
| Rv1096ko | -0.115 | -3.906 |
| Rv3684ko | 0.239 | -1.628 |
| delta_otsA_trehalose | -0.027 | -0.595 |