Top 10 genes with highest correlation to Rv3788/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0303/- | (cc=0.4881) | info on Rv0303/- |
| Rv0071/- | (cc=0.4765) | info on Rv0071/- |
| Rv0484c/- | (cc=0.4679) | info on Rv0484c/- |
| Rv1761c/- | (cc=0.428) | info on Rv1761c/- |
| Rv2636/- | (cc=0.4229) | info on Rv2636/- |
| Rv0724A/- | (cc=0.3979) | info on Rv0724A/- |
| Rv0918/- | (cc=0.3973) | info on Rv0918/- |
| Rv0483/lprQ | (cc=0.3962) | info on Rv0483/lprQ |
| Rv0445c/sigK | (cc=0.396) | info on Rv0445c/sigK |
| Rv0592/mce2D | (cc=0.3959) | info on Rv0592/mce2D |
Correlation of Rv3788/- with Rv0724A/-
Normalized LFCs for Rv3788/-:
(description and provenance of datasets)
| Rv3788/- | Rv0724A/- | |
| Fe_supp_jason_reseq | -0.401 | -1.474 |
| low_pH_jason_reseq | -0.823 | -2.195 |
| NO_jason_reseq | -0.685 | -1.549 |
| B6_jason_reseq | -1.016 | -1.015 |
| MHCII_jason_reseq | 0.244 | 0.724 |
| Isoniazid02 | 0.227 | -0.495 |
| Rifampicin4 | -0.439 | -1.362 |
| Ethambutol3 | 0.056 | -0.81 |
| Meropenem3 | -0.158 | -1.499 |
| Vancomycin16 | -1.451 | -0.703 |
| Rv2680_day32 | -0.326 | 0.614 |
| H37Rv_KO_MarP | 0.111 | -0.406 |
| hypoxia_3wks | -0.259 | -0.981 |
| hypoxia_6wks | -0.263 | -1.403 |
| glycerol | 0.81 | 0.519 |
| cholesterol | 0.463 | -1.029 |
| AJ | 0.898 | 0.898 |
| Bibs02 | 0.069 | 0.244 |
| Bibs02c | 0.17 | 0.111 |
| BL6 | 0.246 | -3.575 |
| BL6a | -0.839 | -1.112 |
| BXD01 | -0.732 | -0.825 |
| BXD010 | -0.592 | -2.545 |
| BXD011 | -0.781 | -1.552 |
| BXD03 | -0.992 | -0.961 |
| BXD04 | -0.7 | -0.638 |
| BXD05 | -0.088 | -1.374 |
| BXD06 | -0.275 | -1.514 |
| BXD07 | -0.627 | -1.022 |
| BXD08 | -0.877 | -1.221 |
| BXD09 | -0.579 | -1.807 |
| CAST | 0.35 | 0.531 |
| CCcont | -0.215 | -4.268 |
| DS01 | -0.051 | 0.094 |
| DS02 | 0.573 | -0.936 |
| DS04 | -0.625 | -0.835 |
| DS0c | -0.02 | -0.473 |
| GP01 | -0.665 | -2.822 |
| GP02 | -1.084 | -1.581 |
| GP0c | -0.608 | -2.584 |
| NOD | 1.378 | 0.015 |
| NZO | 0.676 | 0.597 |
| PWK | 0.318 | -0.24 |
| H37Rv_KO_CtpC | 0.737 | -0.079 |
| H37Rv_KO_CtpD | 0.672 | 1.128 |
| H37Rv_KO_Rv1272 | -1.091 | 0.333 |
| H37Rv_KO_SugABC | -2.448 | -1.764 |
| H37Rv_KO_MbtN | -0.968 | -2.048 |
| Trans05 | -0.334 | -0.111 |
| macrophage_unactivated | -0.685 | -1.335 |
| IL1 | -0.314 | -0.074 |
| Rapamycin | -0.126 | -1.611 |
| Tcell | -0.925 | -1.486 |
| GMCSF | -0.415 | -0.481 |
| IFNab | -0.381 | -2.035 |
| IFNg | 0.0 | -1.697 |
| IFNg_GMCSF1 | -0.952 | 0.368 |
| Rv1432_day32 | 0.738 | 1.902 |
| Rv1565c_day32 | -0.472 | -1.579 |
| secA2_input | 1.594 | -0.268 |
| delta_Rv3594 | -0.462 | 0.434 |
| delta_Rv3717 | -0.344 | 0.71 |
| delta_Rv3811 | -0.143 | -0.344 |
| delta_Rv0954 | -0.836 | -0.395 |
| PonA1 | 0.507 | -0.233 |
| EccD1_KO | -0.888 | 0.046 |
| EspI_KO | -1.124 | -0.385 |
| PE35_KO | -0.613 | 0.473 |
| PPE68_KO | -1.357 | -0.282 |
| glycerol2 | -0.2 | -0.249 |
| lignocerate | 0.186 | -1.405 |
| oleate | 0.02 | 0.086 |
| phosphatidylcholine | 0.253 | -0.183 |
| acetate | -0.575 | -1.19 |
| glucAc | -0.549 | -2.881 |
| Rv0950ko | 0.516 | 0.793 |
| Rv1096ko | -0.241 | -0.283 |
| Rv3684ko | -0.452 | -0.93 |
| delta_otsA_trehalose | 0.734 | 2.105 |