Top 10 genes with highest correlation to Rv3770B/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1831/- | (cc=0.5911) | info on Rv1831/- |
| Rv0222/echA1 | (cc=0.5824) | info on Rv0222/echA1 |
| Rv1616/- | (cc=0.5693) | info on Rv1616/- |
| Rv3146/nuoB | (cc=0.5674) | info on Rv3146/nuoB |
| Rv0309/- | (cc=0.5335) | info on Rv0309/- |
| Rv1505c/- | (cc=0.5273) | info on Rv1505c/- |
| Rv2825c/- | (cc=0.5243) | info on Rv2825c/- |
| Rv2495c/bkdC | (cc=0.5208) | info on Rv2495c/bkdC |
| Rv2456c/- | (cc=0.5148) | info on Rv2456c/- |
| Rv3470c/ilvB2 | (cc=0.514) | info on Rv3470c/ilvB2 |
Correlation of Rv3770B/- with Rv1831/-
Normalized LFCs for Rv3770B/-:
(description and provenance of datasets)
| Rv3770B/- | Rv1831/- | |
| Fe_supp_jason_reseq | -1.675 | -0.275 |
| low_pH_jason_reseq | -1.302 | -0.952 |
| NO_jason_reseq | -0.16 | -0.68 |
| B6_jason_reseq | -2.219 | -1.36 |
| MHCII_jason_reseq | -3.504 | -0.162 |
| Isoniazid02 | 0.819 | 0.665 |
| Rifampicin4 | -0.842 | -0.531 |
| Ethambutol3 | 0.026 | 1.136 |
| Meropenem3 | -0.31 | 0.271 |
| Vancomycin16 | 1.173 | -0.355 |
| Rv2680_day32 | 0.368 | 0.69 |
| H37Rv_KO_MarP | -0.346 | -0.512 |
| hypoxia_3wks | -0.211 | 0.124 |
| hypoxia_6wks | -0.342 | 1.021 |
| glycerol | 1.542 | -0.11 |
| cholesterol | 2.008 | 0.052 |
| AJ | 0.18 | -0.613 |
| Bibs02 | -0.319 | -1.674 |
| Bibs02c | 0.681 | 0.349 |
| BL6 | 2.153 | 0.796 |
| BL6a | 2.365 | 1.37 |
| BXD01 | 1.88 | 2.036 |
| BXD010 | 1.015 | 0.407 |
| BXD011 | 1.725 | 1.379 |
| BXD03 | 1.77 | 1.217 |
| BXD04 | 3.099 | 1.986 |
| BXD05 | 2.054 | 1.501 |
| BXD06 | 2.271 | 1.635 |
| BXD07 | 2.047 | 1.565 |
| BXD08 | 2.3 | 2.417 |
| BXD09 | 2.524 | 1.261 |
| CAST | 2.865 | -0.087 |
| CCcont | 1.557 | 1.331 |
| DS01 | -1.619 | -0.349 |
| DS02 | 0.128 | -0.487 |
| DS04 | 2.781 | 1.148 |
| DS0c | 1.114 | 0.476 |
| GP01 | 1.543 | -0.413 |
| GP02 | -1.205 | 1.186 |
| GP0c | 0.404 | -0.086 |
| NOD | 2.257 | 1.302 |
| NZO | -1.793 | -1.05 |
| PWK | 1.361 | 0.198 |
| H37Rv_KO_CtpC | -0.033 | 0.72 |
| H37Rv_KO_CtpD | 0.121 | -0.09 |
| H37Rv_KO_Rv1272 | 0.918 | 1.759 |
| H37Rv_KO_SugABC | 1.782 | 1.836 |
| H37Rv_KO_MbtN | 2.066 | 1.611 |
| Trans05 | 2.42 | 1.252 |
| macrophage_unactivated | 0.331 | 0.568 |
| IL1 | 0.211 | -0.083 |
| Rapamycin | 0.028 | -0.439 |
| Tcell | 1.219 | 0.091 |
| GMCSF | -0.145 | 0.314 |
| IFNab | 1.533 | 0.689 |
| IFNg | 0.457 | 0.265 |
| IFNg_GMCSF1 | 1.389 | 0.547 |
| Rv1432_day32 | 0.0 | 1.313 |
| Rv1565c_day32 | 1.204 | -0.471 |
| secA2_input | -0.266 | -0.25 |
| delta_Rv3594 | 1.747 | -0.494 |
| delta_Rv3717 | 0.292 | 0.323 |
| delta_Rv3811 | 0.836 | -0.004 |
| delta_Rv0954 | -0.942 | -0.375 |
| PonA1 | 1.377 | -1.199 |
| EccD1_KO | 0.664 | 0.96 |
| EspI_KO | 0.693 | 0.414 |
| PE35_KO | 0.825 | -0.029 |
| PPE68_KO | -0.358 | 0.106 |
| glycerol2 | 0.464 | -0.263 |
| lignocerate | -0.884 | 0.145 |
| oleate | 0.224 | 0.424 |
| phosphatidylcholine | 0.231 | 0.326 |
| acetate | -1.584 | -0.8 |
| glucAc | -2.417 | -0.318 |
| Rv0950ko | 1.098 | -0.012 |
| Rv1096ko | 1.794 | -0.546 |
| Rv3684ko | 1.677 | -0.193 |
| delta_otsA_trehalose | -2.395 | -2.555 |