Top 10 genes with highest correlation to Rv3766/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3607c/folB | (cc=0.5235) | info on Rv3607c/folB |
| Rv3295/- | (cc=0.507) | info on Rv3295/- |
| Rv0755c/PPE12 | (cc=0.4889) | info on Rv0755c/PPE12 |
| Rv1033c/trcR | (cc=0.4611) | info on Rv1033c/trcR |
| Rv1646/PE17 | (cc=0.4608) | info on Rv1646/PE17 |
| Rv2332/mez | (cc=0.4538) | info on Rv2332/mez |
| Rv3749c/- | (cc=0.4486) | info on Rv3749c/- |
| Rv1087A/- | (cc=0.4465) | info on Rv1087A/- |
| Rv1041c/- | (cc=0.438) | info on Rv1041c/- |
| Rv3018c/PPE46 | (cc=0.4327) | info on Rv3018c/PPE46 |
Correlation of Rv3766/- with Rv1087A/-
Normalized LFCs for Rv3766/-:
(description and provenance of datasets)
| Rv3766/- | Rv1087A/- | |
| Fe_supp_jason_reseq | 1.023 | 0.453 |
| low_pH_jason_reseq | -0.11 | -1.086 |
| NO_jason_reseq | -0.042 | 0.123 |
| B6_jason_reseq | 0.625 | 1.213 |
| MHCII_jason_reseq | 2.035 | 1.116 |
| Isoniazid02 | 0.402 | 0.035 |
| Rifampicin4 | 0.412 | 0.398 |
| Ethambutol3 | 0.185 | -0.103 |
| Meropenem3 | 0.056 | -1.94 |
| Vancomycin16 | -0.085 | -0.875 |
| Rv2680_day32 | 1.218 | 0.296 |
| H37Rv_KO_MarP | 0.343 | 0.066 |
| hypoxia_3wks | -0.319 | -0.686 |
| hypoxia_6wks | -0.345 | -0.844 |
| glycerol | -0.192 | -1.915 |
| cholesterol | 0.302 | -1.713 |
| AJ | 1.839 | -0.182 |
| Bibs02 | 0.527 | 0.041 |
| Bibs02c | -0.317 | 0.115 |
| BL6 | -1.424 | -0.445 |
| BL6a | 0.716 | -0.099 |
| BXD01 | 0.644 | -0.927 |
| BXD010 | 0.634 | -0.156 |
| BXD011 | -0.149 | -0.253 |
| BXD03 | 0.178 | -0.731 |
| BXD04 | 1.352 | -0.476 |
| BXD05 | 0.605 | -0.178 |
| BXD06 | 0.933 | -1.182 |
| BXD07 | 0.301 | -0.407 |
| BXD08 | 0.3 | -0.761 |
| BXD09 | 1.073 | -0.564 |
| CAST | 1.126 | 0.22 |
| CCcont | -1.082 | -0.654 |
| DS01 | 0.57 | -0.38 |
| DS02 | 0.0 | 0.151 |
| DS04 | 0.603 | -0.389 |
| DS0c | 0.416 | -0.288 |
| GP01 | -0.485 | -1.407 |
| GP02 | -0.672 | -0.019 |
| GP0c | -0.891 | -1.673 |
| NOD | 2.341 | -0.677 |
| NZO | 1.821 | 0.351 |
| PWK | 1.113 | 0.233 |
| H37Rv_KO_CtpC | 0.884 | -0.031 |
| H37Rv_KO_CtpD | 1.459 | 0.673 |
| H37Rv_KO_Rv1272 | 0.578 | 0.166 |
| H37Rv_KO_SugABC | 0.358 | 0.715 |
| H37Rv_KO_MbtN | -0.789 | -0.102 |
| Trans05 | -0.259 | 0.132 |
| macrophage_unactivated | -0.988 | -0.578 |
| IL1 | -0.771 | -0.51 |
| Rapamycin | -1.571 | -1.111 |
| Tcell | -0.482 | -0.727 |
| GMCSF | -0.549 | -0.283 |
| IFNab | -1.587 | -1.246 |
| IFNg | -1.269 | -0.898 |
| IFNg_GMCSF1 | -0.496 | -0.314 |
| Rv1432_day32 | -0.257 | 0.447 |
| Rv1565c_day32 | 2.072 | 0.423 |
| secA2_input | 0.067 | -0.823 |
| delta_Rv3594 | 0.439 | 0.032 |
| delta_Rv3717 | 0.409 | -1.053 |
| delta_Rv3811 | 0.115 | -1.044 |
| delta_Rv0954 | 0.992 | -0.009 |
| PonA1 | -0.485 | -0.631 |
| EccD1_KO | 1.605 | 0.671 |
| EspI_KO | 2.878 | 0.873 |
| PE35_KO | -2.526 | 0.187 |
| PPE68_KO | 1.945 | -0.038 |
| glycerol2 | 1.666 | 0.581 |
| lignocerate | 1.218 | 0.592 |
| oleate | 0.768 | 0.296 |
| phosphatidylcholine | 1.34 | 0.769 |
| acetate | -0.69 | 0.326 |
| glucAc | 0.467 | 0.52 |
| Rv0950ko | 0.066 | 0.365 |
| Rv1096ko | 0.317 | -0.075 |
| Rv3684ko | 0.878 | -0.151 |
| delta_otsA_trehalose | 0.05 | -0.724 |