Top 10 genes with highest correlation to Rv3680/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3679/- | (cc=0.6755) | info on Rv3679/- |
| Rv0505c/serB1 | (cc=0.6554) | info on Rv0505c/serB1 |
| Rv1421/- | (cc=0.6354) | info on Rv1421/- |
| Rv2837c/- | (cc=0.6279) | info on Rv2837c/- |
| Rv3215/entC | (cc=0.5995) | info on Rv3215/entC |
| Rv0998/- | (cc=0.5957) | info on Rv0998/- |
| Rv2966c/- | (cc=0.5688) | info on Rv2966c/- |
| Rv1821/secA2 | (cc=0.5413) | info on Rv1821/secA2 |
| Rv2553c/- | (cc=0.5391) | info on Rv2553c/- |
| Rv1856c/- | (cc=0.524) | info on Rv1856c/- |
Correlation of Rv3680/- with Rv2966c/-
Normalized LFCs for Rv3680/-:
(description and provenance of datasets)
| Rv3680/- | Rv2966c/- | |
| Fe_supp_jason_reseq | 1.689 | 2.671 |
| low_pH_jason_reseq | 1.673 | -0.634 |
| NO_jason_reseq | 0.0 | 0.0 |
| B6_jason_reseq | 0.0 | -0.421 |
| MHCII_jason_reseq | 0.0 | -0.236 |
| Isoniazid02 | -1.072 | 1.011 |
| Rifampicin4 | -0.474 | -0.309 |
| Ethambutol3 | -0.59 | -0.795 |
| Meropenem3 | -0.21 | -3.068 |
| Vancomycin16 | -0.464 | -1.785 |
| Rv2680_day32 | 0.0 | 0.359 |
| H37Rv_KO_MarP | -0.766 | -1.82 |
| hypoxia_3wks | -0.55 | -0.478 |
| hypoxia_6wks | -0.288 | -1.539 |
| glycerol | 2.455 | 2.126 |
| cholesterol | 1.612 | 1.371 |
| AJ | 0.0 | -0.919 |
| Bibs02 | 1.015 | -0.878 |
| Bibs02c | 1.822 | -0.376 |
| BL6 | 0.0 | -0.839 |
| BL6a | 1.812 | -0.112 |
| BXD01 | 0.358 | -0.874 |
| BXD010 | 0.128 | -0.859 |
| BXD011 | 1.109 | -0.505 |
| BXD03 | 0.75 | 0.072 |
| BXD04 | 0.34 | -0.222 |
| BXD05 | 0.369 | -0.533 |
| BXD06 | 1.035 | -0.426 |
| BXD07 | 0.38 | -0.929 |
| BXD08 | 0.253 | -0.892 |
| BXD09 | 0.69 | -0.557 |
| CAST | 0.0 | -0.913 |
| CCcont | 1.765 | 1.63 |
| DS01 | 0.83 | -0.133 |
| DS02 | 0.217 | -1.045 |
| DS04 | 1.301 | 1.296 |
| DS0c | 0.413 | -1.042 |
| GP01 | 0.0 | -0.662 |
| GP02 | 0.0 | -0.558 |
| GP0c | 0.0 | -0.872 |
| NOD | 0.0 | 1.434 |
| NZO | 0.0 | -1.139 |
| PWK | 0.0 | -0.942 |
| H37Rv_KO_CtpC | 0.162 | -0.292 |
| H37Rv_KO_CtpD | 0.445 | 0.068 |
| H37Rv_KO_Rv1272 | 0.0 | -0.559 |
| H37Rv_KO_SugABC | 0.768 | 0.364 |
| H37Rv_KO_MbtN | 0.691 | 2.759 |
| Trans05 | 0.0 | -0.151 |
| macrophage_unactivated | 0.436 | 0.701 |
| IL1 | 0.0 | -0.78 |
| Rapamycin | 0.0 | 0.239 |
| Tcell | 0.857 | 0.0 |
| GMCSF | 0.0 | -0.217 |
| IFNab | 0.0 | 1.255 |
| IFNg | 0.0 | -0.97 |
| IFNg_GMCSF1 | 0.0 | -0.534 |
| Rv1432_day32 | 0.0 | -0.763 |
| Rv1565c_day32 | 0.0 | -0.269 |
| secA2_input | -2.069 | -0.902 |
| delta_Rv3594 | 1.895 | 4.026 |
| delta_Rv3717 | 3.237 | 3.729 |
| delta_Rv3811 | 2.787 | 2.919 |
| delta_Rv0954 | 0.375 | 2.362 |
| PonA1 | 1.599 | 0.56 |
| EccD1_KO | 0.635 | 0.98 |
| EspI_KO | 0.878 | 0.85 |
| PE35_KO | 0.735 | 0.98 |
| PPE68_KO | 1.245 | 1.795 |
| glycerol2 | -0.193 | -2.287 |
| lignocerate | -0.168 | -1.527 |
| oleate | -0.196 | -1.484 |
| phosphatidylcholine | -0.193 | -1.606 |
| acetate | 0.743 | -0.078 |
| glucAc | 0.462 | -0.81 |
| Rv0950ko | -1.9 | 0.256 |
| Rv1096ko | -2.111 | 0.0 |
| Rv3684ko | -2.663 | -1.248 |
| delta_otsA_trehalose | 0.895 | -0.232 |