Top 10 genes with highest correlation to Rv3680/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3679/- | (cc=0.6755) | info on Rv3679/- |
| Rv0505c/serB1 | (cc=0.6554) | info on Rv0505c/serB1 |
| Rv1421/- | (cc=0.6354) | info on Rv1421/- |
| Rv2837c/- | (cc=0.6279) | info on Rv2837c/- |
| Rv3215/entC | (cc=0.5995) | info on Rv3215/entC |
| Rv0998/- | (cc=0.5957) | info on Rv0998/- |
| Rv2966c/- | (cc=0.5688) | info on Rv2966c/- |
| Rv1821/secA2 | (cc=0.5413) | info on Rv1821/secA2 |
| Rv2553c/- | (cc=0.5391) | info on Rv2553c/- |
| Rv1856c/- | (cc=0.524) | info on Rv1856c/- |
Correlation of Rv3680/- with Rv0998/-
Normalized LFCs for Rv3680/-:
(description and provenance of datasets)
| Rv3680/- | Rv0998/- | |
| Fe_supp_jason_reseq | 1.689 | 3.157 |
| low_pH_jason_reseq | 1.673 | 0.231 |
| NO_jason_reseq | 0.0 | 0.0 |
| B6_jason_reseq | 0.0 | 0.153 |
| MHCII_jason_reseq | 0.0 | 0.0 |
| Isoniazid02 | -1.072 | -1.641 |
| Rifampicin4 | -0.474 | -0.68 |
| Ethambutol3 | -0.59 | 0.541 |
| Meropenem3 | -0.21 | 1.265 |
| Vancomycin16 | -0.464 | -0.889 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.766 | -1.233 |
| hypoxia_3wks | -0.55 | 4.103 |
| hypoxia_6wks | -0.288 | -2.211 |
| glycerol | 2.455 | 4.299 |
| cholesterol | 1.612 | 2.403 |
| AJ | 0.0 | -1.425 |
| Bibs02 | 1.015 | 1.216 |
| Bibs02c | 1.822 | 2.004 |
| BL6 | 0.0 | -0.768 |
| BL6a | 1.812 | 0.762 |
| BXD01 | 0.358 | -0.8 |
| BXD010 | 0.128 | -0.787 |
| BXD011 | 1.109 | -0.655 |
| BXD03 | 0.75 | -0.831 |
| BXD04 | 0.34 | -0.76 |
| BXD05 | 0.369 | -0.457 |
| BXD06 | 1.035 | -0.82 |
| BXD07 | 0.38 | -0.851 |
| BXD08 | 0.253 | -0.817 |
| BXD09 | 0.69 | -0.863 |
| CAST | 0.0 | -0.782 |
| CCcont | 1.765 | 2.422 |
| DS01 | 0.83 | 2.421 |
| DS02 | 0.217 | 0.0 |
| DS04 | 1.301 | 1.903 |
| DS0c | 0.413 | 2.176 |
| GP01 | 0.0 | -0.607 |
| GP02 | 0.0 | -0.511 |
| GP0c | 0.0 | -0.799 |
| NOD | 0.0 | -0.591 |
| NZO | 0.0 | -1.225 |
| PWK | 0.0 | -1.205 |
| H37Rv_KO_CtpC | 0.162 | -0.552 |
| H37Rv_KO_CtpD | 0.445 | -0.43 |
| H37Rv_KO_Rv1272 | 0.0 | -0.725 |
| H37Rv_KO_SugABC | 0.768 | 0.254 |
| H37Rv_KO_MbtN | 0.691 | -0.127 |
| Trans05 | 0.0 | -0.672 |
| macrophage_unactivated | 0.436 | -0.884 |
| IL1 | 0.0 | -1.863 |
| Rapamycin | 0.0 | -1.927 |
| Tcell | 0.857 | -0.912 |
| GMCSF | 0.0 | -2.022 |
| IFNab | 0.0 | -0.547 |
| IFNg | 0.0 | -1.678 |
| IFNg_GMCSF1 | 0.0 | -2.407 |
| Rv1432_day32 | 0.0 | -0.343 |
| Rv1565c_day32 | 0.0 | 1.071 |
| secA2_input | -2.069 | 0.302 |
| delta_Rv3594 | 1.895 | 4.054 |
| delta_Rv3717 | 3.237 | 4.344 |
| delta_Rv3811 | 2.787 | 3.679 |
| delta_Rv0954 | 0.375 | 2.505 |
| PonA1 | 1.599 | 2.734 |
| EccD1_KO | 0.635 | -3.588 |
| EspI_KO | 0.878 | -1.711 |
| PE35_KO | 0.735 | -1.928 |
| PPE68_KO | 1.245 | -2.473 |
| glycerol2 | -0.193 | -4.482 |
| lignocerate | -0.168 | -4.062 |
| oleate | -0.196 | -4.73 |
| phosphatidylcholine | -0.193 | -4.143 |
| acetate | 0.743 | -0.023 |
| glucAc | 0.462 | 0.043 |
| Rv0950ko | -1.9 | -3.435 |
| Rv1096ko | -2.111 | -2.781 |
| Rv3684ko | -2.663 | -2.967 |
| delta_otsA_trehalose | 0.895 | -0.788 |