Top 10 genes with highest correlation to Rv3656c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1604/impA | (cc=0.5376) | info on Rv1604/impA |
| Rv1583c/- | (cc=0.493) | info on Rv1583c/- |
| Rv3819/- | (cc=0.4831) | info on Rv3819/- |
| Rv2253/- | (cc=0.4715) | info on Rv2253/- |
| Rv2689c/- | (cc=0.4707) | info on Rv2689c/- |
| Rv3470c/ilvB2 | (cc=0.4619) | info on Rv3470c/ilvB2 |
| Rv0698/- | (cc=0.4599) | info on Rv0698/- |
| Rv2665/- | (cc=0.4531) | info on Rv2665/- |
| Rv1366/- | (cc=0.4479) | info on Rv1366/- |
| Rv3904c/esxE | (cc=0.4475) | info on Rv3904c/esxE |
Correlation of Rv3656c/- with Rv3470c/ilvB2
Normalized LFCs for Rv3656c/-:
(description and provenance of datasets)
| Rv3656c/- | Rv3470c/ilvB2 | |
| Fe_supp_jason_reseq | -1.424 | -0.415 |
| low_pH_jason_reseq | -0.294 | -0.31 |
| NO_jason_reseq | -1.179 | -0.034 |
| B6_jason_reseq | -3.075 | -1.714 |
| MHCII_jason_reseq | -0.951 | -0.591 |
| Isoniazid02 | -0.317 | 0.333 |
| Rifampicin4 | 0.374 | 0.23 |
| Ethambutol3 | -0.128 | 0.103 |
| Meropenem3 | -0.182 | 0.444 |
| Vancomycin16 | 0.26 | 0.297 |
| Rv2680_day32 | -0.461 | -0.351 |
| H37Rv_KO_MarP | 0.099 | 0.35 |
| hypoxia_3wks | -0.443 | 0.327 |
| hypoxia_6wks | -1.006 | -0.752 |
| glycerol | -0.094 | 0.391 |
| cholesterol | -0.102 | 0.357 |
| AJ | 0.684 | 0.8 |
| Bibs02 | -0.416 | -0.589 |
| Bibs02c | -0.252 | -0.07 |
| BL6 | 1.337 | 1.148 |
| BL6a | 0.0 | 0.462 |
| BXD01 | 1.029 | 0.737 |
| BXD010 | 0.581 | 0.23 |
| BXD011 | 0.736 | 0.709 |
| BXD03 | 0.445 | 0.686 |
| BXD04 | -0.117 | 1.232 |
| BXD05 | 0.225 | 0.399 |
| BXD06 | 0.0 | 0.537 |
| BXD07 | 1.109 | 0.15 |
| BXD08 | 0.392 | 1.282 |
| BXD09 | 0.18 | 0.467 |
| CAST | 0.976 | -0.038 |
| CCcont | 1.844 | 0.817 |
| DS01 | 0.441 | 0.038 |
| DS02 | -0.101 | -0.224 |
| DS04 | 0.991 | 0.239 |
| DS0c | -2.696 | -0.798 |
| GP01 | 0.448 | 1.466 |
| GP02 | -0.316 | -0.659 |
| GP0c | 0.531 | -0.573 |
| NOD | -0.387 | 0.434 |
| NZO | 4.004 | 0.275 |
| PWK | 0.612 | 0.557 |
| H37Rv_KO_CtpC | 0.072 | 0.994 |
| H37Rv_KO_CtpD | 1.582 | 0.391 |
| H37Rv_KO_Rv1272 | -0.535 | 0.329 |
| H37Rv_KO_SugABC | -0.763 | 0.854 |
| H37Rv_KO_MbtN | 0.046 | 0.573 |
| Trans05 | -0.539 | 0.967 |
| macrophage_unactivated | 0.369 | 0.707 |
| IL1 | -1.172 | -0.893 |
| Rapamycin | -1.05 | -0.365 |
| Tcell | -0.342 | -0.489 |
| GMCSF | -0.517 | -0.232 |
| IFNab | -0.662 | -0.088 |
| IFNg | -0.649 | -0.155 |
| IFNg_GMCSF1 | -1.411 | 0.386 |
| Rv1432_day32 | 0.343 | 0.378 |
| Rv1565c_day32 | 0.377 | 0.27 |
| secA2_input | -0.421 | -0.703 |
| delta_Rv3594 | -1.473 | -0.956 |
| delta_Rv3717 | -1.013 | -0.06 |
| delta_Rv3811 | -0.207 | 0.427 |
| delta_Rv0954 | -0.916 | 0.176 |
| PonA1 | 0.166 | -0.235 |
| EccD1_KO | -0.638 | -0.595 |
| EspI_KO | 0.034 | -0.337 |
| PE35_KO | 0.172 | 0.082 |
| PPE68_KO | 0.618 | -0.186 |
| glycerol2 | 0.465 | 0.017 |
| lignocerate | 1.137 | -0.088 |
| oleate | -0.167 | -0.034 |
| phosphatidylcholine | 0.604 | 0.143 |
| acetate | 0.509 | -0.203 |
| glucAc | 2.591 | -0.324 |
| Rv0950ko | 0.458 | -0.19 |
| Rv1096ko | 0.805 | 0.808 |
| Rv3684ko | 0.616 | 0.527 |
| delta_otsA_trehalose | 0.629 | 0.212 |