Top 10 genes with highest correlation to Rv3617/ephA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0338c/- | (cc=0.4594) | info on Rv0338c/- |
| Rv0433/- | (cc=0.4583) | info on Rv0433/- |
| Rv0196/- | (cc=0.4392) | info on Rv0196/- |
| Rv3618/- | (cc=0.4377) | info on Rv3618/- |
| Rv1181/pks4 | (cc=0.4361) | info on Rv1181/pks4 |
| Rv2095c/pafC | (cc=0.4348) | info on Rv2095c/pafC |
| Rv2636/- | (cc=0.4295) | info on Rv2636/- |
| Rv3276c/purK | (cc=0.428) | info on Rv3276c/purK |
| Rv0263c/- | (cc=0.428) | info on Rv0263c/- |
| Rv0942/- | (cc=0.4278) | info on Rv0942/- |
Correlation of Rv3617/ephA with Rv0196/-
Normalized LFCs for Rv3617/ephA:
(description and provenance of datasets)
| Rv3617/ephA | Rv0196/- | |
| Fe_supp_jason_reseq | 0.096 | -0.043 |
| low_pH_jason_reseq | 0.614 | -0.207 |
| NO_jason_reseq | -0.265 | -1.315 |
| B6_jason_reseq | 0.315 | 1.61 |
| MHCII_jason_reseq | 1.159 | 1.826 |
| Isoniazid02 | 0.685 | -0.364 |
| Rifampicin4 | -0.057 | -0.062 |
| Ethambutol3 | 0.535 | 1.347 |
| Meropenem3 | -1.017 | -1.069 |
| Vancomycin16 | -0.814 | -0.507 |
| Rv2680_day32 | -0.319 | -1.72 |
| H37Rv_KO_MarP | -0.216 | -0.701 |
| hypoxia_3wks | -0.698 | -0.303 |
| hypoxia_6wks | -0.505 | 0.532 |
| glycerol | 0.578 | -0.399 |
| cholesterol | 2.126 | -0.294 |
| AJ | 0.371 | 1.134 |
| Bibs02 | -0.044 | 0.355 |
| Bibs02c | -0.944 | -0.323 |
| BL6 | 0.125 | -0.478 |
| BL6a | -0.894 | -0.779 |
| BXD01 | -0.415 | -0.379 |
| BXD010 | -0.572 | -1.336 |
| BXD011 | -0.412 | -0.887 |
| BXD03 | 0.072 | -2.092 |
| BXD04 | -0.546 | -1.498 |
| BXD05 | -0.06 | -0.948 |
| BXD06 | -0.535 | -1.185 |
| BXD07 | -0.596 | -0.295 |
| BXD08 | -0.257 | -0.174 |
| BXD09 | -0.627 | -1.195 |
| CAST | 0.622 | 0.415 |
| CCcont | -0.883 | -0.767 |
| DS01 | -0.409 | -0.202 |
| DS02 | 0.484 | -0.017 |
| DS04 | -0.947 | 1.07 |
| DS0c | -0.492 | -0.314 |
| GP01 | -0.136 | 0.02 |
| GP02 | -0.411 | 0.133 |
| GP0c | -0.333 | -0.796 |
| NOD | 1.046 | 0.325 |
| NZO | -0.048 | 1.01 |
| PWK | 0.51 | 0.32 |
| H37Rv_KO_CtpC | -0.488 | -1.252 |
| H37Rv_KO_CtpD | 0.514 | -0.341 |
| H37Rv_KO_Rv1272 | -0.578 | 0.753 |
| H37Rv_KO_SugABC | 0.564 | 1.674 |
| H37Rv_KO_MbtN | -0.154 | -0.164 |
| Trans05 | 0.287 | 0.675 |
| macrophage_unactivated | -0.461 | -0.675 |
| IL1 | -0.409 | -0.81 |
| Rapamycin | -0.546 | -1.758 |
| Tcell | 0.0 | -0.515 |
| GMCSF | -0.077 | -1.611 |
| IFNab | -0.296 | -1.206 |
| IFNg | 0.19 | 0.438 |
| IFNg_GMCSF1 | 0.396 | 1.166 |
| Rv1432_day32 | 0.102 | 1.615 |
| Rv1565c_day32 | 0.613 | -1.03 |
| secA2_input | 0.587 | 1.18 |
| delta_Rv3594 | -0.239 | -0.782 |
| delta_Rv3717 | 0.125 | 0.229 |
| delta_Rv3811 | 0.183 | 0.28 |
| delta_Rv0954 | -0.315 | -1.187 |
| PonA1 | -0.045 | 0.245 |
| EccD1_KO | 0.016 | -1.075 |
| EspI_KO | -0.086 | -1.095 |
| PE35_KO | 0.058 | -0.131 |
| PPE68_KO | 0.157 | -0.736 |
| glycerol2 | 0.977 | 0.748 |
| lignocerate | 0.558 | 0.395 |
| oleate | -0.422 | 0.757 |
| phosphatidylcholine | 0.471 | 0.465 |
| acetate | 0.071 | 0.828 |
| glucAc | -0.337 | 0.195 |
| Rv0950ko | -0.036 | 0.112 |
| Rv1096ko | 0.344 | 0.084 |
| Rv3684ko | 1.251 | 1.739 |
| delta_otsA_trehalose | 0.257 | -0.843 |