Top 10 genes with highest correlation to Rv3612c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0470A/- | (cc=0.6512) | info on Rv0470A/- |
| Rv2681/- | (cc=0.6217) | info on Rv2681/- |
| Rv0071/- | (cc=0.6207) | info on Rv0071/- |
| Rv2636/- | (cc=0.6031) | info on Rv2636/- |
| Rv1323/fadA4 | (cc=0.6029) | info on Rv1323/fadA4 |
| Rv3641c/fic | (cc=0.5946) | info on Rv3641c/fic |
| Rv3590c/PE_PGRS58 | (cc=0.5689) | info on Rv3590c/PE_PGRS58 |
| Rv0840c/pip | (cc=0.5581) | info on Rv0840c/pip |
| Rv3354/- | (cc=0.5541) | info on Rv3354/- |
| Rv3480c/- | (cc=0.5537) | info on Rv3480c/- |
Correlation of Rv3612c/- with Rv3590c/PE_PGRS58
Normalized LFCs for Rv3612c/-:
(description and provenance of datasets)
| Rv3612c/- | Rv3590c/PE_PGRS58 | |
| Fe_supp_jason_reseq | -0.314 | -0.863 |
| low_pH_jason_reseq | -0.333 | 0.0 |
| NO_jason_reseq | 0.228 | 0.0 |
| B6_jason_reseq | 0.354 | 0.714 |
| MHCII_jason_reseq | 1.809 | 0.27 |
| Isoniazid02 | 1.394 | 0.79 |
| Rifampicin4 | 1.191 | 1.47 |
| Ethambutol3 | 0.069 | 0.728 |
| Meropenem3 | 0.232 | 0.096 |
| Vancomycin16 | 0.297 | 0.109 |
| Rv2680_day32 | 1.278 | 0.488 |
| H37Rv_KO_MarP | -0.065 | -0.143 |
| hypoxia_3wks | -2.512 | -0.287 |
| hypoxia_6wks | -1.643 | -1.102 |
| glycerol | 0.967 | 1.273 |
| cholesterol | -0.227 | 1.279 |
| AJ | 0.692 | 1.245 |
| Bibs02 | 0.628 | 0.833 |
| Bibs02c | 0.887 | 1.082 |
| BL6 | -1.024 | -0.827 |
| BL6a | -0.92 | -0.39 |
| BXD01 | -1.386 | -0.134 |
| BXD010 | -3.698 | -0.928 |
| BXD011 | -1.393 | -1.362 |
| BXD03 | -2.598 | -0.7 |
| BXD04 | -2.528 | -0.575 |
| BXD05 | -2.116 | -0.239 |
| BXD06 | -2.302 | -1.49 |
| BXD07 | -2.05 | -1.003 |
| BXD08 | -2.123 | -0.211 |
| BXD09 | -1.894 | -0.973 |
| CAST | -0.143 | -0.279 |
| CCcont | -1.971 | -0.416 |
| DS01 | 0.186 | 0.149 |
| DS02 | 0.156 | 0.945 |
| DS04 | 0.218 | -0.065 |
| DS0c | 0.192 | 0.589 |
| GP01 | -3.03 | 0.397 |
| GP02 | -3.04 | 0.226 |
| GP0c | -2.059 | 0.251 |
| NOD | -0.192 | 0.0 |
| NZO | 0.897 | 0.302 |
| PWK | 0.041 | 0.242 |
| H37Rv_KO_CtpC | -1.396 | -1.404 |
| H37Rv_KO_CtpD | -0.149 | -0.408 |
| H37Rv_KO_Rv1272 | -0.978 | 0.234 |
| H37Rv_KO_SugABC | -1.643 | -0.215 |
| H37Rv_KO_MbtN | -1.882 | -0.816 |
| Trans05 | -2.219 | -0.608 |
| macrophage_unactivated | 0.079 | 0.079 |
| IL1 | -0.602 | -0.552 |
| Rapamycin | -2.348 | -1.025 |
| Tcell | -0.789 | 0.0 |
| GMCSF | -0.087 | 0.716 |
| IFNab | -1.539 | -0.478 |
| IFNg | -1.62 | -1.245 |
| IFNg_GMCSF1 | -0.239 | -0.584 |
| Rv1432_day32 | -1.109 | 0.516 |
| Rv1565c_day32 | 1.218 | -0.276 |
| secA2_input | -0.88 | 0.038 |
| delta_Rv3594 | -0.953 | -0.451 |
| delta_Rv3717 | -0.578 | -0.736 |
| delta_Rv3811 | -2.119 | -0.253 |
| delta_Rv0954 | -1.16 | -0.469 |
| PonA1 | -0.472 | 0.175 |
| EccD1_KO | -2.171 | 0.599 |
| EspI_KO | -0.704 | -0.739 |
| PE35_KO | 0.359 | 0.531 |
| PPE68_KO | 0.323 | 0.134 |
| glycerol2 | 0.748 | -0.27 |
| lignocerate | -0.377 | 0.426 |
| oleate | -0.011 | 0.099 |
| phosphatidylcholine | 0.077 | 0.098 |
| acetate | -0.372 | 0.387 |
| glucAc | -0.977 | 0.877 |
| Rv0950ko | 0.084 | 1.043 |
| Rv1096ko | 0.446 | 0.899 |
| Rv3684ko | -1.038 | -0.413 |
| delta_otsA_trehalose | -0.057 | -0.122 |