Top 10 genes with highest correlation to Rv3547/ddn:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1810/- | (cc=0.3693) | info on Rv1810/- |
| Rv1748/- | (cc=0.3647) | info on Rv1748/- |
| Rv2080/lppJ | (cc=0.3504) | info on Rv2080/lppJ |
| Rv1914c/- | (cc=0.3435) | info on Rv1914c/- |
| Rv3158/nuoN | (cc=0.337) | info on Rv3158/nuoN |
| Rv1472/echA12 | (cc=0.3354) | info on Rv1472/echA12 |
| Rv1951c/- | (cc=0.3263) | info on Rv1951c/- |
| Rv2456c/- | (cc=0.3259) | info on Rv2456c/- |
| Rv0755A/- | (cc=0.3256) | info on Rv0755A/- |
| Rv1885c/- | (cc=0.3226) | info on Rv1885c/- |
Correlation of Rv3547/ddn with Rv1951c/-
Normalized LFCs for Rv3547/ddn:
(description and provenance of datasets)
| Rv3547/ddn | Rv1951c/- | |
| Fe_supp_jason_reseq | -0.3 | -0.289 |
| low_pH_jason_reseq | -0.744 | -0.44 |
| NO_jason_reseq | -0.129 | -0.404 |
| B6_jason_reseq | 1.055 | -0.181 |
| MHCII_jason_reseq | -0.104 | -1.654 |
| Isoniazid02 | -0.613 | 1.107 |
| Rifampicin4 | 0.309 | 0.493 |
| Ethambutol3 | 0.738 | 0.835 |
| Meropenem3 | -0.062 | 0.46 |
| Vancomycin16 | 0.218 | 0.947 |
| Rv2680_day32 | -0.01 | -0.342 |
| H37Rv_KO_MarP | 0.591 | -0.683 |
| hypoxia_3wks | 0.0 | -0.467 |
| hypoxia_6wks | -0.044 | -0.589 |
| glycerol | -0.459 | -2.152 |
| cholesterol | -0.931 | -1.586 |
| AJ | -0.113 | 0.123 |
| Bibs02 | -0.117 | 1.854 |
| Bibs02c | 0.106 | -0.045 |
| BL6 | 0.735 | -0.79 |
| BL6a | 0.6 | 0.063 |
| BXD01 | 0.497 | -0.504 |
| BXD010 | -0.082 | 0.041 |
| BXD011 | 0.065 | 0.707 |
| BXD03 | -0.1 | -0.523 |
| BXD04 | 0.734 | -0.04 |
| BXD05 | -0.191 | -1.434 |
| BXD06 | 0.08 | 0.0 |
| BXD07 | 0.547 | -0.558 |
| BXD08 | 0.249 | -0.414 |
| BXD09 | 0.386 | 0.762 |
| CAST | 0.269 | -0.619 |
| CCcont | 0.376 | -0.243 |
| DS01 | -0.236 | -0.077 |
| DS02 | -0.205 | -0.047 |
| DS04 | 0.063 | 0.465 |
| DS0c | -0.456 | -1.413 |
| GP01 | -0.466 | 1.517 |
| GP02 | 0.162 | 1.203 |
| GP0c | 0.173 | 0.721 |
| NOD | -0.177 | -1.375 |
| NZO | -0.826 | -1.423 |
| PWK | -0.705 | -1.317 |
| H37Rv_KO_CtpC | -0.179 | 0.599 |
| H37Rv_KO_CtpD | -0.814 | 0.142 |
| H37Rv_KO_Rv1272 | 1.26 | 1.985 |
| H37Rv_KO_SugABC | 0.773 | 0.617 |
| H37Rv_KO_MbtN | 0.652 | 2.48 |
| Trans05 | 0.638 | 1.016 |
| macrophage_unactivated | 0.619 | 0.189 |
| IL1 | -0.323 | -0.759 |
| Rapamycin | 0.068 | -0.313 |
| Tcell | 0.766 | -0.081 |
| GMCSF | -0.288 | -0.56 |
| IFNab | -0.635 | -0.556 |
| IFNg | -0.061 | 1.034 |
| IFNg_GMCSF1 | -0.17 | -1.502 |
| Rv1432_day32 | -0.275 | 0.416 |
| Rv1565c_day32 | 0.324 | 0.787 |
| secA2_input | 0.64 | -2.404 |
| delta_Rv3594 | 0.415 | 1.826 |
| delta_Rv3717 | -0.083 | 1.048 |
| delta_Rv3811 | -0.336 | 1.851 |
| delta_Rv0954 | 0.376 | 1.531 |
| PonA1 | 0.893 | 1.243 |
| EccD1_KO | 0.27 | 0.26 |
| EspI_KO | -0.573 | -1.141 |
| PE35_KO | -0.038 | -0.172 |
| PPE68_KO | 0.243 | 1.616 |
| glycerol2 | 0.157 | -0.57 |
| lignocerate | 0.432 | 0.595 |
| oleate | 0.129 | -2.142 |
| phosphatidylcholine | 0.345 | -0.265 |
| acetate | -0.203 | 0.352 |
| glucAc | 0.012 | 0.56 |
| Rv0950ko | 0.133 | 1.107 |
| Rv1096ko | 0.35 | 0.151 |
| Rv3684ko | -0.92 | -0.619 |
| delta_otsA_trehalose | 0.054 | -0.387 |