Top 10 genes with highest correlation to Rv3547/ddn:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1810/- | (cc=0.3693) | info on Rv1810/- |
| Rv1748/- | (cc=0.3647) | info on Rv1748/- |
| Rv2080/lppJ | (cc=0.3504) | info on Rv2080/lppJ |
| Rv1914c/- | (cc=0.3435) | info on Rv1914c/- |
| Rv3158/nuoN | (cc=0.337) | info on Rv3158/nuoN |
| Rv1472/echA12 | (cc=0.3354) | info on Rv1472/echA12 |
| Rv1951c/- | (cc=0.3263) | info on Rv1951c/- |
| Rv2456c/- | (cc=0.3259) | info on Rv2456c/- |
| Rv0755A/- | (cc=0.3256) | info on Rv0755A/- |
| Rv1885c/- | (cc=0.3226) | info on Rv1885c/- |
Correlation of Rv3547/ddn with Rv1472/echA12
Normalized LFCs for Rv3547/ddn:
(description and provenance of datasets)
| Rv3547/ddn | Rv1472/echA12 | |
| Fe_supp_jason_reseq | -0.3 | -0.332 |
| low_pH_jason_reseq | -0.744 | 0.417 |
| NO_jason_reseq | -0.129 | 1.365 |
| B6_jason_reseq | 1.055 | 1.589 |
| MHCII_jason_reseq | -0.104 | -0.836 |
| Isoniazid02 | -0.613 | 0.534 |
| Rifampicin4 | 0.309 | -0.027 |
| Ethambutol3 | 0.738 | 2.531 |
| Meropenem3 | -0.062 | 3.02 |
| Vancomycin16 | 0.218 | 0.215 |
| Rv2680_day32 | -0.01 | -0.012 |
| H37Rv_KO_MarP | 0.591 | 0.303 |
| hypoxia_3wks | 0.0 | 0.622 |
| hypoxia_6wks | -0.044 | 1.253 |
| glycerol | -0.459 | 0.022 |
| cholesterol | -0.931 | 0.007 |
| AJ | -0.113 | 0.247 |
| Bibs02 | -0.117 | 0.913 |
| Bibs02c | 0.106 | 0.377 |
| BL6 | 0.735 | 0.565 |
| BL6a | 0.6 | 0.723 |
| BXD01 | 0.497 | 1.173 |
| BXD010 | -0.082 | 0.565 |
| BXD011 | 0.065 | 1.173 |
| BXD03 | -0.1 | 1.053 |
| BXD04 | 0.734 | 1.263 |
| BXD05 | -0.191 | 0.99 |
| BXD06 | 0.08 | 0.949 |
| BXD07 | 0.547 | 0.542 |
| BXD08 | 0.249 | 0.894 |
| BXD09 | 0.386 | 0.77 |
| CAST | 0.269 | 2.514 |
| CCcont | 0.376 | -0.008 |
| DS01 | -0.236 | -0.116 |
| DS02 | -0.205 | 0.263 |
| DS04 | 0.063 | 0.502 |
| DS0c | -0.456 | -0.489 |
| GP01 | -0.466 | 0.449 |
| GP02 | 0.162 | 0.476 |
| GP0c | 0.173 | 0.175 |
| NOD | -0.177 | 1.328 |
| NZO | -0.826 | 0.422 |
| PWK | -0.705 | 1.189 |
| H37Rv_KO_CtpC | -0.179 | 0.42 |
| H37Rv_KO_CtpD | -0.814 | 0.419 |
| H37Rv_KO_Rv1272 | 1.26 | 0.102 |
| H37Rv_KO_SugABC | 0.773 | -0.037 |
| H37Rv_KO_MbtN | 0.652 | 1.214 |
| Trans05 | 0.638 | 0.787 |
| macrophage_unactivated | 0.619 | 5.498 |
| IL1 | -0.323 | -2.13 |
| Rapamycin | 0.068 | -1.814 |
| Tcell | 0.766 | 6.0 |
| GMCSF | -0.288 | -2.152 |
| IFNab | -0.635 | -2.76 |
| IFNg | -0.061 | -2.135 |
| IFNg_GMCSF1 | -0.17 | -2.592 |
| Rv1432_day32 | -0.275 | -0.237 |
| Rv1565c_day32 | 0.324 | 0.757 |
| secA2_input | 0.64 | 0.853 |
| delta_Rv3594 | 0.415 | -0.606 |
| delta_Rv3717 | -0.083 | -0.91 |
| delta_Rv3811 | -0.336 | -1.038 |
| delta_Rv0954 | 0.376 | -0.677 |
| PonA1 | 0.893 | -0.13 |
| EccD1_KO | 0.27 | -1.273 |
| EspI_KO | -0.573 | -0.088 |
| PE35_KO | -0.038 | 0.09 |
| PPE68_KO | 0.243 | -0.522 |
| glycerol2 | 0.157 | -0.095 |
| lignocerate | 0.432 | -0.229 |
| oleate | 0.129 | 0.217 |
| phosphatidylcholine | 0.345 | 0.01 |
| acetate | -0.203 | -0.204 |
| glucAc | 0.012 | -0.419 |
| Rv0950ko | 0.133 | 0.241 |
| Rv1096ko | 0.35 | 0.133 |
| Rv3684ko | -0.92 | -0.626 |
| delta_otsA_trehalose | 0.054 | -0.366 |