Top 10 genes with highest correlation to Rv3539/PPE63:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3713/cobQ2 | (cc=0.5056) | info on Rv3713/cobQ2 |
| Rv0552/- | (cc=0.4871) | info on Rv0552/- |
| Rv0273c/- | (cc=0.4803) | info on Rv0273c/- |
| Rv0687/- | (cc=0.4759) | info on Rv0687/- |
| Rv2164c/- | (cc=0.4629) | info on Rv2164c/- |
| Rv2678c/hemE | (cc=0.4562) | info on Rv2678c/hemE |
| Rv0144/- | (cc=0.4502) | info on Rv0144/- |
| Rv0701/rplC | (cc=0.4445) | info on Rv0701/rplC |
| Rv1339/- | (cc=0.4403) | info on Rv1339/- |
| Rv1191/- | (cc=0.4401) | info on Rv1191/- |
Correlation of Rv3539/PPE63 with Rv1339/-
Normalized LFCs for Rv3539/PPE63:
(description and provenance of datasets)
| Rv3539/PPE63 | Rv1339/- | |
| Fe_supp_jason_reseq | -0.025 | 0.725 |
| low_pH_jason_reseq | 0.867 | -0.323 |
| NO_jason_reseq | 0.407 | -1.089 |
| B6_jason_reseq | -0.193 | -0.552 |
| MHCII_jason_reseq | -0.049 | 0.492 |
| Isoniazid02 | 0.07 | -0.773 |
| Rifampicin4 | 0.612 | 0.073 |
| Ethambutol3 | -0.255 | -0.597 |
| Meropenem3 | 2.53 | 0.586 |
| Vancomycin16 | 0.544 | 0.35 |
| Rv2680_day32 | -0.683 | 0.0 |
| H37Rv_KO_MarP | 0.337 | -2.406 |
| hypoxia_3wks | 0.347 | 4.865 |
| hypoxia_6wks | 0.986 | 6.0 |
| glycerol | -0.225 | -0.202 |
| cholesterol | -0.162 | -0.145 |
| AJ | 0.395 | 0.0 |
| Bibs02 | 1.08 | -0.183 |
| Bibs02c | 0.471 | -0.209 |
| BL6 | -0.338 | -0.125 |
| BL6a | 0.247 | 0.776 |
| BXD01 | 0.348 | 1.004 |
| BXD010 | -0.07 | 2.357 |
| BXD011 | 0.545 | 1.093 |
| BXD03 | -0.389 | 2.022 |
| BXD04 | 0.529 | 4.206 |
| BXD05 | 0.516 | 1.098 |
| BXD06 | -0.13 | 1.996 |
| BXD07 | -0.018 | 0.63 |
| BXD08 | 0.052 | 0.899 |
| BXD09 | 0.108 | 1.018 |
| CAST | 0.177 | -0.23 |
| CCcont | -0.188 | 3.245 |
| DS01 | -0.481 | -0.236 |
| DS02 | -0.058 | -0.217 |
| DS04 | -0.188 | 2.566 |
| DS0c | 0.218 | -0.217 |
| GP01 | 0.423 | -0.099 |
| GP02 | 1.274 | -0.083 |
| GP0c | 0.728 | 0.51 |
| NOD | 0.254 | -0.225 |
| NZO | 0.906 | -0.199 |
| PWK | 0.173 | -0.196 |
| H37Rv_KO_CtpC | 0.467 | 2.233 |
| H37Rv_KO_CtpD | 0.629 | 0.791 |
| H37Rv_KO_Rv1272 | 1.146 | 0.356 |
| H37Rv_KO_SugABC | 0.858 | 2.448 |
| H37Rv_KO_MbtN | 0.494 | 5.506 |
| Trans05 | 0.782 | 0.228 |
| macrophage_unactivated | -0.211 | -6.0 |
| IL1 | -0.409 | -4.242 |
| Rapamycin | 0.132 | -6.0 |
| Tcell | -0.143 | -4.774 |
| GMCSF | -0.301 | -5.365 |
| IFNab | 0.067 | 0.327 |
| IFNg | -0.633 | -3.555 |
| IFNg_GMCSF1 | 0.201 | -3.101 |
| Rv1432_day32 | 0.026 | 0.0 |
| Rv1565c_day32 | 1.005 | -0.182 |
| secA2_input | 0.661 | -3.035 |
| delta_Rv3594 | 0.684 | 4.748 |
| delta_Rv3717 | 1.031 | 5.474 |
| delta_Rv3811 | 0.805 | 4.579 |
| delta_Rv0954 | 0.0 | 1.096 |
| PonA1 | 0.744 | -0.717 |
| EccD1_KO | -0.997 | -4.746 |
| EspI_KO | -0.642 | -4.269 |
| PE35_KO | -0.977 | -5.061 |
| PPE68_KO | -1.177 | -4.086 |
| glycerol2 | -0.092 | -0.531 |
| lignocerate | 0.188 | -0.462 |
| oleate | 0.197 | 0.0 |
| phosphatidylcholine | 0.132 | -0.531 |
| acetate | -0.791 | -0.63 |
| glucAc | -0.068 | -0.392 |
| Rv0950ko | 0.0 | -2.376 |
| Rv1096ko | 0.368 | -1.65 |
| Rv3684ko | 0.0 | -2.898 |
| delta_otsA_trehalose | -0.075 | -0.055 |