TnSeqCorr

Top 10 genes with highest correlation to Rv3539/PPE63:

update plotcorrelationlink to info on gene
Rv3713/cobQ2 (cc=0.5056) info on Rv3713/cobQ2
Rv0552/- (cc=0.4871) info on Rv0552/-
Rv0273c/- (cc=0.4803) info on Rv0273c/-
Rv0687/- (cc=0.4759) info on Rv0687/-
Rv2164c/- (cc=0.4629) info on Rv2164c/-
Rv2678c/hemE (cc=0.4562) info on Rv2678c/hemE
Rv0144/- (cc=0.4502) info on Rv0144/-
Rv0701/rplC (cc=0.4445) info on Rv0701/rplC
Rv1339/- (cc=0.4403) info on Rv1339/-
Rv1191/- (cc=0.4401) info on Rv1191/-

Correlation of Rv3539/PPE63 with Rv0687/-

Normalized LFCs for Rv3539/PPE63:
(description and provenance of datasets)
Rv3539/PPE63Rv0687/-
Fe_supp_jason_reseq

-0.025

-1.187

low_pH_jason_reseq

0.867

0.805

NO_jason_reseq

0.407

0.412

B6_jason_reseq

-0.193

-0.312

MHCII_jason_reseq

-0.049

-0.311

Isoniazid02

0.07

1.116

Rifampicin4

0.612

1.083

Ethambutol3

-0.255

1.198

Meropenem3

2.53

3.163

Vancomycin16

0.544

1.061

Rv2680_day32

-0.683

-0.637

H37Rv_KO_MarP

0.337

-0.189

hypoxia_3wks

0.347

-0.311

hypoxia_6wks

0.986

0.867

glycerol

-0.225

-0.764

cholesterol

-0.162

-0.391

AJ

0.395

0.316

Bibs02

1.08

-0.624

Bibs02c

0.471

-1.381

BL6

-0.338

-0.89

BL6a

0.247

-1.075

BXD01

0.348

-0.518

BXD010

-0.07

-1.907

BXD011

0.545

-1.009

BXD03

-0.389

-1.15

BXD04

0.529

-1.209

BXD05

0.516

-1.271

BXD06

-0.13

-1.261

BXD07

-0.018

-0.847

BXD08

0.052

-0.091

BXD09

0.108

-1.374

CAST

0.177

0.177

CCcont

-0.188

-0.403

DS01

-0.481

-0.298

DS02

-0.058

-0.443

DS04

-0.188

0.538

DS0c

0.218

0.167

GP01

0.423

0.0

GP02

1.274

-1.195

GP0c

0.728

0.677

NOD

0.254

-1.219

NZO

0.906

0.201

PWK

0.173

-0.026

H37Rv_KO_CtpC

0.467

0.164

H37Rv_KO_CtpD

0.629

0.942

H37Rv_KO_Rv1272

1.146

-0.221

H37Rv_KO_SugABC

0.858

-0.583

H37Rv_KO_MbtN

0.494

0.164

Trans05

0.782

0.513

macrophage_unactivated

-0.211

-1.61

IL1

-0.409

-1.385

Rapamycin

0.132

-1.841

Tcell

-0.143

-1.522

GMCSF

-0.301

-0.082

IFNab

0.067

-1.542

IFNg

-0.633

-1.136

IFNg_GMCSF1

0.201

0.371

Rv1432_day32

0.026

-0.661

Rv1565c_day32

1.005

1.469

secA2_input

0.661

0.967

delta_Rv3594

0.684

1.744

delta_Rv3717

1.031

1.085

delta_Rv3811

0.805

1.558

delta_Rv0954

0.0

0.238

PonA1

0.744

0.974

EccD1_KO

-0.997

-0.187

EspI_KO

-0.642

-0.625

PE35_KO

-0.977

-0.455

PPE68_KO

-1.177

-0.499

glycerol2

-0.092

0.635

lignocerate

0.188

0.061

oleate

0.197

0.912

phosphatidylcholine

0.132

0.326

acetate

-0.791

-0.266

glucAc

-0.068

0.026

Rv0950ko

0.0

-0.241

Rv1096ko

0.368

-0.564

Rv3684ko

0.0

-1.15

delta_otsA_trehalose

-0.075

0.333