Top 10 genes with highest correlation to Rv3502c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3551/- | (cc=0.8591) | info on Rv3551/- |
| Rv3544c/fadE28 | (cc=0.8557) | info on Rv3544c/fadE28 |
| Rv3542c/- | (cc=0.8547) | info on Rv3542c/- |
| Rv0485/- | (cc=0.8275) | info on Rv0485/- |
| Rv1568/bioA | (cc=0.8221) | info on Rv1568/bioA |
| Rv3556c/fadA6 | (cc=0.8119) | info on Rv3556c/fadA6 |
| Rv1589/bioB | (cc=0.8012) | info on Rv1589/bioB |
| Rv3882c/eccE1 | (cc=0.7959) | info on Rv3882c/eccE1 |
| Rv3615c/espC | (cc=0.7908) | info on Rv3615c/espC |
| Rv1590/- | (cc=0.7866) | info on Rv1590/- |
Correlation of Rv3502c/- with Rv1568/bioA
Normalized LFCs for Rv3502c/-:
(description and provenance of datasets)
| Rv3502c/- | Rv1568/bioA | |
| Fe_supp_jason_reseq | -0.336 | 0.395 |
| low_pH_jason_reseq | -1.28 | -0.239 |
| NO_jason_reseq | -0.016 | 0.239 |
| B6_jason_reseq | -3.524 | -4.106 |
| MHCII_jason_reseq | -3.922 | -3.512 |
| Isoniazid02 | -2.007 | 0.215 |
| Rifampicin4 | 0.669 | 0.401 |
| Ethambutol3 | -1.852 | -0.377 |
| Meropenem3 | -1.668 | -0.265 |
| Vancomycin16 | -0.525 | 0.127 |
| Rv2680_day32 | -2.581 | -3.765 |
| H37Rv_KO_MarP | 0.508 | -0.202 |
| hypoxia_3wks | -0.714 | 0.427 |
| hypoxia_6wks | -0.687 | 0.098 |
| glycerol | 0.69 | -6.0 |
| cholesterol | -3.872 | -4.527 |
| AJ | -4.212 | -6.0 |
| Bibs02 | -4.722 | -5.898 |
| Bibs02c | -5.065 | -6.0 |
| BL6 | -2.7 | -4.035 |
| BL6a | -4.653 | -6.0 |
| BXD01 | -2.668 | -4.071 |
| BXD010 | -3.551 | -4.003 |
| BXD011 | -0.815 | -3.121 |
| BXD03 | -1.315 | -3.185 |
| BXD04 | -1.429 | -3.754 |
| BXD05 | -2.501 | -3.771 |
| BXD06 | -2.961 | -4.306 |
| BXD07 | -3.253 | -4.328 |
| BXD08 | -1.451 | -4.157 |
| BXD09 | -3.117 | -4.533 |
| CAST | -3.824 | -5.642 |
| CCcont | -0.174 | -1.046 |
| DS01 | -4.965 | -6.0 |
| DS02 | -3.316 | -6.0 |
| DS04 | -3.781 | -4.659 |
| DS0c | -5.251 | -6.0 |
| GP01 | -1.835 | -2.637 |
| GP02 | -1.846 | -2.331 |
| GP0c | -0.039 | 0.031 |
| NOD | -2.804 | -4.914 |
| NZO | -2.861 | -6.0 |
| PWK | -3.645 | -5.789 |
| H37Rv_KO_CtpC | -3.507 | -4.242 |
| H37Rv_KO_CtpD | -2.53 | -2.771 |
| H37Rv_KO_Rv1272 | -2.502 | -3.683 |
| H37Rv_KO_SugABC | 0.205 | -1.29 |
| H37Rv_KO_MbtN | -1.675 | -0.066 |
| Trans05 | -2.747 | -3.755 |
| macrophage_unactivated | 0.407 | 1.471 |
| IL1 | -0.483 | -0.415 |
| Rapamycin | -0.844 | 0.598 |
| Tcell | -2.955 | 1.554 |
| GMCSF | 0.1 | 0.906 |
| IFNab | 1.787 | 2.6 |
| IFNg | 0.526 | -1.042 |
| IFNg_GMCSF1 | 0.349 | -0.547 |
| Rv1432_day32 | -1.936 | -4.919 |
| Rv1565c_day32 | -5.231 | -6.0 |
| secA2_input | -0.125 | 0.593 |
| delta_Rv3594 | 0.104 | 0.289 |
| delta_Rv3717 | 0.113 | 0.569 |
| delta_Rv3811 | 0.291 | 0.196 |
| delta_Rv0954 | 0.253 | 0.979 |
| PonA1 | -0.246 | 0.6 |
| EccD1_KO | -0.585 | 0.178 |
| EspI_KO | -0.376 | -0.285 |
| PE35_KO | -1.018 | -0.376 |
| PPE68_KO | -0.886 | -0.685 |
| glycerol2 | -0.593 | 0.0 |
| lignocerate | 0.084 | 1.303 |
| oleate | -1.195 | 0.0 |
| phosphatidylcholine | -0.683 | 0.819 |
| acetate | -0.652 | 0.437 |
| glucAc | 0.216 | 0.0 |
| Rv0950ko | 0.09 | 0.7 |
| Rv1096ko | 0.03 | 0.872 |
| Rv3684ko | 0.098 | 0.76 |
| delta_otsA_trehalose | -0.09 | -0.65 |