Top 10 genes with highest correlation to Rv3478/PPE60:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3479/- | (cc=0.5427) | info on Rv3479/- |
| Rv1523/- | (cc=0.5356) | info on Rv1523/- |
| Rv2517c/- | (cc=0.507) | info on Rv2517c/- |
| Rv0888/- | (cc=0.491) | info on Rv0888/- |
| Rv2556c/- | (cc=0.4787) | info on Rv2556c/- |
| Rv2332/mez | (cc=0.4784) | info on Rv2332/mez |
| Rv1803c/PE_PGRS32 | (cc=0.4726) | info on Rv1803c/PE_PGRS32 |
| Rv3059/cyp136 | (cc=0.4557) | info on Rv3059/cyp136 |
| Rv2659c/- | (cc=0.4538) | info on Rv2659c/- |
| Rv0089/- | (cc=0.4531) | info on Rv0089/- |
Correlation of Rv3478/PPE60 with Rv1523/-
Normalized LFCs for Rv3478/PPE60:
(description and provenance of datasets)
| Rv3478/PPE60 | Rv1523/- | |
| Fe_supp_jason_reseq | -0.627 | -0.32 |
| low_pH_jason_reseq | -0.31 | -0.472 |
| NO_jason_reseq | -0.509 | -0.165 |
| B6_jason_reseq | -0.499 | 0.012 |
| MHCII_jason_reseq | -0.12 | -0.193 |
| Isoniazid02 | 0.259 | 0.0 |
| Rifampicin4 | 0.301 | 0.487 |
| Ethambutol3 | 0.637 | 1.065 |
| Meropenem3 | -0.805 | -0.115 |
| Vancomycin16 | -0.738 | -0.125 |
| Rv2680_day32 | 1.156 | 0.366 |
| H37Rv_KO_MarP | 0.94 | 0.172 |
| hypoxia_3wks | -0.658 | 0.391 |
| hypoxia_6wks | -0.921 | -0.035 |
| glycerol | -1.76 | -1.099 |
| cholesterol | -1.858 | -0.695 |
| AJ | 0.096 | 0.486 |
| Bibs02 | -0.326 | -0.428 |
| Bibs02c | -0.577 | -0.744 |
| BL6 | -0.581 | 0.159 |
| BL6a | -0.561 | -0.079 |
| BXD01 | -0.462 | 0.04 |
| BXD010 | -0.15 | -0.293 |
| BXD011 | -0.452 | -0.334 |
| BXD03 | -1.083 | -0.49 |
| BXD04 | -0.275 | -0.324 |
| BXD05 | -0.065 | 0.348 |
| BXD06 | -0.698 | -0.365 |
| BXD07 | -0.392 | -0.519 |
| BXD08 | -0.414 | -0.066 |
| BXD09 | -1.048 | -0.122 |
| CAST | 0.048 | 0.06 |
| CCcont | 0.008 | -0.374 |
| DS01 | -0.802 | 0.217 |
| DS02 | -0.011 | -0.128 |
| DS04 | -0.346 | -0.104 |
| DS0c | -0.57 | -0.086 |
| GP01 | 0.232 | 0.214 |
| GP02 | -1.328 | -0.497 |
| GP0c | -1.284 | -0.011 |
| NOD | 0.911 | 0.151 |
| NZO | 0.182 | 0.692 |
| PWK | 0.206 | -0.105 |
| H37Rv_KO_CtpC | -0.472 | -0.141 |
| H37Rv_KO_CtpD | -1.876 | 0.261 |
| H37Rv_KO_Rv1272 | -0.269 | -0.032 |
| H37Rv_KO_SugABC | -0.099 | 0.554 |
| H37Rv_KO_MbtN | -0.243 | 0.193 |
| Trans05 | 0.823 | 0.328 |
| macrophage_unactivated | -1.054 | 0.164 |
| IL1 | -0.243 | -0.792 |
| Rapamycin | -0.252 | -0.292 |
| Tcell | -0.13 | -0.355 |
| GMCSF | -1.302 | -0.327 |
| IFNab | -0.441 | -0.505 |
| IFNg | -0.604 | -0.053 |
| IFNg_GMCSF1 | -0.459 | -0.192 |
| Rv1432_day32 | 2.139 | 0.546 |
| Rv1565c_day32 | 0.055 | 0.163 |
| secA2_input | 0.05 | -0.531 |
| delta_Rv3594 | 0.162 | 0.259 |
| delta_Rv3717 | 0.258 | 0.0 |
| delta_Rv3811 | -0.399 | 0.378 |
| delta_Rv0954 | 0.567 | 0.229 |
| PonA1 | 0.92 | 0.615 |
| EccD1_KO | 0.799 | 0.714 |
| EspI_KO | 0.77 | 0.023 |
| PE35_KO | 1.047 | 0.117 |
| PPE68_KO | 0.893 | 0.176 |
| glycerol2 | -0.517 | 0.789 |
| lignocerate | 0.141 | 0.276 |
| oleate | -0.164 | 1.099 |
| phosphatidylcholine | 1.605 | 0.769 |
| acetate | -0.574 | -0.75 |
| glucAc | -0.595 | -0.142 |
| Rv0950ko | -0.467 | 0.1 |
| Rv1096ko | -0.253 | -0.229 |
| Rv3684ko | -0.478 | -0.157 |
| delta_otsA_trehalose | -1.319 | -0.656 |