Top 10 genes with highest correlation to Rv3478/PPE60:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3479/- | (cc=0.5427) | info on Rv3479/- |
| Rv1523/- | (cc=0.5356) | info on Rv1523/- |
| Rv2517c/- | (cc=0.507) | info on Rv2517c/- |
| Rv0888/- | (cc=0.491) | info on Rv0888/- |
| Rv2556c/- | (cc=0.4787) | info on Rv2556c/- |
| Rv2332/mez | (cc=0.4784) | info on Rv2332/mez |
| Rv1803c/PE_PGRS32 | (cc=0.4726) | info on Rv1803c/PE_PGRS32 |
| Rv3059/cyp136 | (cc=0.4557) | info on Rv3059/cyp136 |
| Rv2659c/- | (cc=0.4538) | info on Rv2659c/- |
| Rv0089/- | (cc=0.4531) | info on Rv0089/- |
Correlation of Rv3478/PPE60 with Rv0089/-
Normalized LFCs for Rv3478/PPE60:
(description and provenance of datasets)
| Rv3478/PPE60 | Rv0089/- | |
| Fe_supp_jason_reseq | -0.627 | -0.617 |
| low_pH_jason_reseq | -0.31 | -0.221 |
| NO_jason_reseq | -0.509 | 0.047 |
| B6_jason_reseq | -0.499 | 0.241 |
| MHCII_jason_reseq | -0.12 | 0.487 |
| Isoniazid02 | 0.259 | 0.877 |
| Rifampicin4 | 0.301 | -0.701 |
| Ethambutol3 | 0.637 | -0.483 |
| Meropenem3 | -0.805 | -0.564 |
| Vancomycin16 | -0.738 | 0.0 |
| Rv2680_day32 | 1.156 | 1.554 |
| H37Rv_KO_MarP | 0.94 | 1.943 |
| hypoxia_3wks | -0.658 | -0.59 |
| hypoxia_6wks | -0.921 | -0.699 |
| glycerol | -1.76 | -1.188 |
| cholesterol | -1.858 | -0.61 |
| AJ | 0.096 | 0.069 |
| Bibs02 | -0.326 | 0.098 |
| Bibs02c | -0.577 | 0.0 |
| BL6 | -0.581 | -1.724 |
| BL6a | -0.561 | -1.411 |
| BXD01 | -0.462 | -1.681 |
| BXD010 | -0.15 | -1.478 |
| BXD011 | -0.452 | -1.727 |
| BXD03 | -1.083 | -1.397 |
| BXD04 | -0.275 | -0.973 |
| BXD05 | -0.065 | -1.529 |
| BXD06 | -0.698 | -1.642 |
| BXD07 | -0.392 | -2.006 |
| BXD08 | -0.414 | -2.382 |
| BXD09 | -1.048 | -1.596 |
| CAST | 0.048 | 0.492 |
| CCcont | 0.008 | -0.977 |
| DS01 | -0.802 | -0.209 |
| DS02 | -0.011 | 0.153 |
| DS04 | -0.346 | 0.462 |
| DS0c | -0.57 | 0.308 |
| GP01 | 0.232 | 0.326 |
| GP02 | -1.328 | -1.336 |
| GP0c | -1.284 | -0.489 |
| NOD | 0.911 | 0.145 |
| NZO | 0.182 | -0.1 |
| PWK | 0.206 | 0.389 |
| H37Rv_KO_CtpC | -0.472 | -1.138 |
| H37Rv_KO_CtpD | -1.876 | -3.064 |
| H37Rv_KO_Rv1272 | -0.269 | -0.742 |
| H37Rv_KO_SugABC | -0.099 | -0.481 |
| H37Rv_KO_MbtN | -0.243 | -1.571 |
| Trans05 | 0.823 | 0.008 |
| macrophage_unactivated | -1.054 | -2.727 |
| IL1 | -0.243 | -1.246 |
| Rapamycin | -0.252 | -2.071 |
| Tcell | -0.13 | -1.3 |
| GMCSF | -1.302 | -1.848 |
| IFNab | -0.441 | -2.524 |
| IFNg | -0.604 | -1.871 |
| IFNg_GMCSF1 | -0.459 | -0.936 |
| Rv1432_day32 | 2.139 | 0.301 |
| Rv1565c_day32 | 0.055 | 0.594 |
| secA2_input | 0.05 | -1.028 |
| delta_Rv3594 | 0.162 | 0.0 |
| delta_Rv3717 | 0.258 | -0.216 |
| delta_Rv3811 | -0.399 | 0.755 |
| delta_Rv0954 | 0.567 | 0.442 |
| PonA1 | 0.92 | -0.308 |
| EccD1_KO | 0.799 | -0.118 |
| EspI_KO | 0.77 | 1.221 |
| PE35_KO | 1.047 | 0.204 |
| PPE68_KO | 0.893 | 1.497 |
| glycerol2 | -0.517 | 1.494 |
| lignocerate | 0.141 | 1.736 |
| oleate | -0.164 | -0.505 |
| phosphatidylcholine | 1.605 | 1.304 |
| acetate | -0.574 | 2.168 |
| glucAc | -0.595 | 1.508 |
| Rv0950ko | -0.467 | -0.169 |
| Rv1096ko | -0.253 | 0.983 |
| Rv3684ko | -0.478 | 1.019 |
| delta_otsA_trehalose | -1.319 | 1.304 |