Top 10 genes with highest correlation to Rv3431c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1075c/- | (cc=0.5139) | info on Rv1075c/- |
| Rv1040c/PE8 | (cc=0.4583) | info on Rv1040c/PE8 |
| Rv0675/echA5 | (cc=0.4352) | info on Rv0675/echA5 |
| Rv2142c/parE2 | (cc=0.433) | info on Rv2142c/parE2 |
| Rv0571c/- | (cc=0.4289) | info on Rv0571c/- |
| Rv2530A/vapB39 | (cc=0.4211) | info on Rv2530A/vapB39 |
| Rv0523c/- | (cc=0.4161) | info on Rv0523c/- |
| Rv1907c/- | (cc=0.4143) | info on Rv1907c/- |
| Rv0829/- | (cc=0.4057) | info on Rv0829/- |
| Rv1538c/ansA | (cc=0.3948) | info on Rv1538c/ansA |
Correlation of Rv3431c/- with Rv0675/echA5
Normalized LFCs for Rv3431c/-:
(description and provenance of datasets)
| Rv3431c/- | Rv0675/echA5 | |
| Fe_supp_jason_reseq | -0.714 | -0.901 |
| low_pH_jason_reseq | -0.686 | -3.001 |
| NO_jason_reseq | -0.499 | 0.541 |
| B6_jason_reseq | -0.525 | -0.342 |
| MHCII_jason_reseq | 0.641 | 2.09 |
| Isoniazid02 | 0.342 | 0.298 |
| Rifampicin4 | 0.141 | 0.263 |
| Ethambutol3 | 1.51 | 0.024 |
| Meropenem3 | 0.008 | -0.315 |
| Vancomycin16 | -0.021 | 0.207 |
| Rv2680_day32 | 1.029 | 0.439 |
| H37Rv_KO_MarP | -0.295 | 0.446 |
| hypoxia_3wks | -0.498 | 0.598 |
| hypoxia_6wks | 0.0 | -0.457 |
| glycerol | -1.204 | -2.319 |
| cholesterol | -0.582 | -2.408 |
| AJ | 0.23 | -1.867 |
| Bibs02 | 0.069 | -2.874 |
| Bibs02c | 0.708 | 1.92 |
| BL6 | 0.59 | -2.205 |
| BL6a | 0.403 | 0.567 |
| BXD01 | 0.07 | -0.443 |
| BXD010 | 0.0 | -0.7 |
| BXD011 | -0.253 | -1.322 |
| BXD03 | 0.079 | -2.126 |
| BXD04 | 0.353 | -1.493 |
| BXD05 | 0.553 | -0.692 |
| BXD06 | -0.037 | -1.612 |
| BXD07 | -0.399 | -1.174 |
| BXD08 | -0.238 | -0.452 |
| BXD09 | 0.208 | -1.881 |
| CAST | 0.11 | 0.759 |
| CCcont | -0.228 | -2.347 |
| DS01 | -0.014 | -0.24 |
| DS02 | 0.829 | 0.239 |
| DS04 | -0.49 | -2.228 |
| DS0c | 0.564 | 0.0 |
| GP01 | -0.788 | -1.393 |
| GP02 | 0.891 | 1.173 |
| GP0c | 0.148 | -1.159 |
| NOD | 0.107 | -0.763 |
| NZO | -0.045 | -1.296 |
| PWK | -0.156 | -0.374 |
| H37Rv_KO_CtpC | -1.297 | -1.056 |
| H37Rv_KO_CtpD | 0.162 | 0.204 |
| H37Rv_KO_Rv1272 | 0.605 | -2.486 |
| H37Rv_KO_SugABC | -0.25 | -1.647 |
| H37Rv_KO_MbtN | -0.537 | -0.35 |
| Trans05 | 0.498 | -2.172 |
| macrophage_unactivated | 0.518 | -1.016 |
| IL1 | -0.917 | -2.797 |
| Rapamycin | -0.85 | -4.057 |
| Tcell | -0.603 | -0.6 |
| GMCSF | -1.019 | -0.85 |
| IFNab | -0.133 | -0.973 |
| IFNg | -0.241 | -1.97 |
| IFNg_GMCSF1 | 1.69 | -2.024 |
| Rv1432_day32 | -0.133 | -0.271 |
| Rv1565c_day32 | -0.264 | -1.535 |
| secA2_input | 1.653 | 1.032 |
| delta_Rv3594 | 1.608 | 3.006 |
| delta_Rv3717 | 0.807 | 1.845 |
| delta_Rv3811 | 1.157 | -0.583 |
| delta_Rv0954 | 0.695 | -0.506 |
| PonA1 | 1.789 | 3.098 |
| EccD1_KO | 0.483 | -0.822 |
| EspI_KO | 0.396 | -3.679 |
| PE35_KO | 0.54 | -0.846 |
| PPE68_KO | 0.214 | -0.214 |
| glycerol2 | 0.039 | -0.231 |
| lignocerate | -0.035 | -1.782 |
| oleate | 0.516 | 0.588 |
| phosphatidylcholine | 0.332 | -1.006 |
| acetate | -0.173 | 0.136 |
| glucAc | -0.366 | -3.463 |
| Rv0950ko | 0.081 | -1.493 |
| Rv1096ko | 0.775 | -1.113 |
| Rv3684ko | 0.452 | -3.124 |
| delta_otsA_trehalose | -0.662 | 0.09 |