Top 10 genes with highest correlation to Rv3421c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3419c/gcp | (cc=0.7192) | info on Rv3419c/gcp |
| Rv0055/rpsR1 | (cc=0.6925) | info on Rv0055/rpsR1 |
| Rv0508/- | (cc=0.6807) | info on Rv0508/- |
| Rv1239c/corA | (cc=0.656) | info on Rv1239c/corA |
| Rv0668/rpoC | (cc=0.6365) | info on Rv0668/rpoC |
| Rv1593c/- | (cc=0.6084) | info on Rv1593c/- |
| Rv2444c/rne | (cc=0.5961) | info on Rv2444c/rne |
| Rv1604/impA | (cc=0.5959) | info on Rv1604/impA |
| Rv0823c/- | (cc=0.5939) | info on Rv0823c/- |
| Rv3278c/- | (cc=0.5842) | info on Rv3278c/- |
Correlation of Rv3421c/- with Rv0668/rpoC
Normalized LFCs for Rv3421c/-:
(description and provenance of datasets)
| Rv3421c/- | Rv0668/rpoC | |
| Fe_supp_jason_reseq | -1.268 | 0.319 |
| low_pH_jason_reseq | 0.157 | 2.259 |
| NO_jason_reseq | 2.221 | 2.809 |
| B6_jason_reseq | 0.53 | 1.836 |
| MHCII_jason_reseq | -2.712 | -0.149 |
| Isoniazid02 | -0.201 | -0.108 |
| Rifampicin4 | 2.134 | 1.172 |
| Ethambutol3 | 1.135 | -0.626 |
| Meropenem3 | 0.648 | -0.182 |
| Vancomycin16 | 0.923 | -0.196 |
| Rv2680_day32 | 0.05 | 0.0 |
| H37Rv_KO_MarP | 1.008 | 0.203 |
| hypoxia_3wks | -1.224 | -1.934 |
| hypoxia_6wks | -0.411 | 1.293 |
| glycerol | 1.279 | 0.12 |
| cholesterol | -0.89 | 0.0 |
| AJ | 0.698 | 0.934 |
| Bibs02 | 0.103 | -0.371 |
| Bibs02c | -0.258 | 0.124 |
| BL6 | 1.757 | 1.017 |
| BL6a | 1.492 | 1.175 |
| BXD01 | 2.681 | 2.02 |
| BXD010 | 2.829 | 1.496 |
| BXD011 | 2.128 | 2.698 |
| BXD03 | 1.94 | 1.173 |
| BXD04 | 3.241 | 2.865 |
| BXD05 | 2.264 | 2.213 |
| BXD06 | 2.67 | 1.994 |
| BXD07 | 2.084 | 1.825 |
| BXD08 | 1.965 | 2.118 |
| BXD09 | 1.816 | 0.974 |
| CAST | 1.86 | 1.023 |
| CCcont | 2.288 | 0.663 |
| DS01 | -0.802 | 0.522 |
| DS02 | -0.922 | 0.129 |
| DS04 | 0.11 | 0.523 |
| DS0c | -0.737 | -0.137 |
| GP01 | -0.607 | -0.277 |
| GP02 | -0.353 | -0.303 |
| GP0c | -0.077 | 0.577 |
| NOD | 1.422 | -0.142 |
| NZO | 0.22 | 0.886 |
| PWK | 2.568 | 1.537 |
| H37Rv_KO_CtpC | -0.096 | -0.455 |
| H37Rv_KO_CtpD | 1.298 | 0.51 |
| H37Rv_KO_Rv1272 | 0.542 | 0.239 |
| H37Rv_KO_SugABC | 2.209 | 1.074 |
| H37Rv_KO_MbtN | 0.963 | 1.0 |
| Trans05 | 0.827 | 1.024 |
| macrophage_unactivated | -1.146 | -0.581 |
| IL1 | -1.391 | -1.406 |
| Rapamycin | -1.114 | -0.368 |
| Tcell | 0.0 | 0.362 |
| GMCSF | -0.108 | -1.046 |
| IFNab | 1.255 | -0.363 |
| IFNg | -2.079 | -0.673 |
| IFNg_GMCSF1 | -1.141 | -1.012 |
| Rv1432_day32 | -0.804 | 0.139 |
| Rv1565c_day32 | -0.842 | -0.588 |
| secA2_input | -0.424 | 0.445 |
| delta_Rv3594 | -2.492 | -0.061 |
| delta_Rv3717 | -0.142 | 1.233 |
| delta_Rv3811 | -1.09 | 0.559 |
| delta_Rv0954 | -1.093 | -1.562 |
| PonA1 | -0.56 | -1.2 |
| EccD1_KO | -0.372 | 0.0 |
| EspI_KO | -0.322 | 0.211 |
| PE35_KO | 0.23 | 0.42 |
| PPE68_KO | -0.857 | -0.512 |
| glycerol2 | -0.115 | -1.073 |
| lignocerate | 0.838 | -0.22 |
| oleate | -0.373 | -1.086 |
| phosphatidylcholine | 0.496 | 0.224 |
| acetate | 2.545 | 0.507 |
| glucAc | 1.892 | 0.279 |
| Rv0950ko | 1.462 | 0.0 |
| Rv1096ko | 0.109 | -0.832 |
| Rv3684ko | 1.916 | -1.159 |
| delta_otsA_trehalose | -0.477 | -0.773 |