TnSeqCorr

Top 10 genes with highest correlation to Rv3373/echA18:

update plotcorrelationlink to info on gene
Rv0691c/- (cc=0.4411) info on Rv0691c/-
Rv3626c/- (cc=0.3899) info on Rv3626c/-
Rv0778/cyp126 (cc=0.3752) info on Rv0778/cyp126
Rv0146/- (cc=0.3708) info on Rv0146/-
Rv0300/vapB2 (cc=0.3696) info on Rv0300/vapB2
Rv1261c/- (cc=0.3689) info on Rv1261c/-
Rv3452/cut4 (cc=0.3634) info on Rv3452/cut4
Rv0463/- (cc=0.3626) info on Rv0463/-
Rv1574/- (cc=0.3608) info on Rv1574/-
Rv3741c/- (cc=0.3605) info on Rv3741c/-

Correlation of Rv3373/echA18 with Rv0463/-

Normalized LFCs for Rv3373/echA18:
(description and provenance of datasets)
Rv3373/echA18Rv0463/-
Fe_supp_jason_reseq

1.089

-0.008

low_pH_jason_reseq

-2.466

-0.403

NO_jason_reseq

0.475

-0.677

B6_jason_reseq

-1.006

-1.18

MHCII_jason_reseq

-0.077

-1.029

Isoniazid02

0.303

0.274

Rifampicin4

-1.021

0.246

Ethambutol3

-0.269

0.507

Meropenem3

2.485

1.163

Vancomycin16

0.202

0.992

Rv2680_day32

0.499

0.272

H37Rv_KO_MarP

-1.851

0.612

hypoxia_3wks

0.475

-0.666

hypoxia_6wks

-0.954

-0.15

glycerol

-0.211

-0.413

cholesterol

1.444

-1.723

AJ

1.914

-1.213

Bibs02

1.057

0.762

Bibs02c

0.077

1.006

BL6

0.104

0.576

BL6a

0.722

0.428

BXD01

1.038

0.418

BXD010

-1.92

-0.866

BXD011

-0.281

0.7

BXD03

0.232

-0.718

BXD04

0.406

0.113

BXD05

0.216

0.048

BXD06

-0.139

-0.146

BXD07

0.517

0.137

BXD08

0.228

0.201

BXD09

0.133

0.128

CAST

0.561

-0.022

CCcont

0.037

1.167

DS01

0.575

-0.2

DS02

-0.69

0.124

DS04

-0.489

-1.698

DS0c

-0.878

-1.103

GP01

-1.711

-1.374

GP02

-1.623

-1.038

GP0c

-0.818

-0.652

NOD

-1.572

-1.077

NZO

0.445

0.416

PWK

-0.831

-0.091

H37Rv_KO_CtpC

-0.384

0.014

H37Rv_KO_CtpD

2.245

-0.982

H37Rv_KO_Rv1272

-1.619

-0.169

H37Rv_KO_SugABC

-0.877

-1.953

H37Rv_KO_MbtN

1.805

-0.343

Trans05

-1.195

1.108

macrophage_unactivated

-0.218

0.565

IL1

-0.05

1.026

Rapamycin

0.534

0.654

Tcell

0.518

1.144

GMCSF

0.536

1.141

IFNab

-0.369

1.022

IFNg

1.088

1.053

IFNg_GMCSF1

-0.053

0.305

Rv1432_day32

-2.327

-0.43

Rv1565c_day32

-1.802

-0.144

secA2_input

-2.264

-0.601

delta_Rv3594

-1.092

-1.196

delta_Rv3717

-3.62

-1.763

delta_Rv3811

-0.922

-0.971

delta_Rv0954

-0.751

-0.994

PonA1

0.048

-1.825

EccD1_KO

0.178

-0.335

EspI_KO

0.65

0.927

PE35_KO

0.866

0.808

PPE68_KO

-0.71

0.064

glycerol2

0.129

0.977

lignocerate

-0.304

0.718

oleate

0.658

0.217

phosphatidylcholine

0.231

0.462

acetate

0.54

0.903

glucAc

-0.923

0.123

Rv0950ko

0.887

1.309

Rv1096ko

1.457

0.214

Rv3684ko

0.92

-0.449

delta_otsA_trehalose

-2.912

-1.296