Top 10 genes with highest correlation to Rv3317/sdhD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3316/sdhC | (cc=0.6555) | info on Rv3316/sdhC |
| Rv3318/sdhA | (cc=0.6485) | info on Rv3318/sdhA |
| Rv2052c/- | (cc=0.5649) | info on Rv2052c/- |
| Rv3412/- | (cc=0.5323) | info on Rv3412/- |
| Rv2772c/- | (cc=0.5287) | info on Rv2772c/- |
| Rv3319/sdhB | (cc=0.5084) | info on Rv3319/sdhB |
| Rv0190/- | (cc=0.4887) | info on Rv0190/- |
| Rv1206/fadD6 | (cc=0.4633) | info on Rv1206/fadD6 |
| Rv2564/glnQ | (cc=0.448) | info on Rv2564/glnQ |
| Rv1348/irtA | (cc=0.4321) | info on Rv1348/irtA |
Correlation of Rv3317/sdhD with Rv3316/sdhC
Normalized LFCs for Rv3317/sdhD:
(description and provenance of datasets)
| Rv3317/sdhD | Rv3316/sdhC | |
| Fe_supp_jason_reseq | 1.448 | -1.506 |
| low_pH_jason_reseq | 2.039 | 2.392 |
| NO_jason_reseq | 3.46 | 4.038 |
| B6_jason_reseq | -0.637 | -0.387 |
| MHCII_jason_reseq | -2.064 | -2.065 |
| Isoniazid02 | 0.166 | 0.902 |
| Rifampicin4 | 0.273 | 0.081 |
| Ethambutol3 | -0.17 | 1.332 |
| Meropenem3 | 0.558 | 0.569 |
| Vancomycin16 | 0.268 | 0.663 |
| Rv2680_day32 | 0.011 | -1.599 |
| H37Rv_KO_MarP | -2.838 | -2.664 |
| hypoxia_3wks | 0.227 | -0.072 |
| hypoxia_6wks | 0.146 | -0.196 |
| glycerol | 0.23 | 0.424 |
| cholesterol | -0.987 | -0.249 |
| AJ | -2.345 | -0.333 |
| Bibs02 | -1.405 | -0.882 |
| Bibs02c | -0.497 | -3.428 |
| BL6 | -1.478 | -1.665 |
| BL6a | -0.314 | -2.469 |
| BXD01 | -0.43 | -1.372 |
| BXD010 | -0.171 | -0.973 |
| BXD011 | -1.765 | -1.077 |
| BXD03 | -0.936 | -2.461 |
| BXD04 | -0.937 | -1.914 |
| BXD05 | -2.394 | -0.995 |
| BXD06 | -0.632 | -1.22 |
| BXD07 | -0.621 | -2.481 |
| BXD08 | -1.217 | -2.497 |
| BXD09 | -1.401 | -0.645 |
| CAST | 0.646 | -0.317 |
| CCcont | -0.294 | -0.868 |
| DS01 | -0.435 | -1.477 |
| DS02 | 0.257 | 0.011 |
| DS04 | 1.023 | 0.741 |
| DS0c | 0.448 | -0.585 |
| GP01 | -2.861 | -2.333 |
| GP02 | -2.411 | -2.569 |
| GP0c | -1.941 | -2.794 |
| NOD | -0.792 | -1.923 |
| NZO | -1.959 | -0.87 |
| PWK | -0.311 | 1.118 |
| H37Rv_KO_CtpC | 1.044 | -0.546 |
| H37Rv_KO_CtpD | 0.333 | 0.225 |
| H37Rv_KO_Rv1272 | -1.487 | -1.903 |
| H37Rv_KO_SugABC | -1.762 | -0.954 |
| H37Rv_KO_MbtN | -1.563 | -1.618 |
| Trans05 | -2.897 | -1.74 |
| macrophage_unactivated | -0.139 | 0.23 |
| IL1 | 0.279 | -0.386 |
| Rapamycin | -1.132 | -0.485 |
| Tcell | 1.965 | 2.561 |
| GMCSF | 0.248 | 2.368 |
| IFNab | -2.162 | -1.01 |
| IFNg | -0.118 | 0.992 |
| IFNg_GMCSF1 | -1.203 | 1.166 |
| Rv1432_day32 | -2.821 | -1.996 |
| Rv1565c_day32 | -3.609 | -1.786 |
| secA2_input | 1.295 | 0.276 |
| delta_Rv3594 | -0.639 | -2.486 |
| delta_Rv3717 | -2.292 | -3.228 |
| delta_Rv3811 | -1.854 | -2.107 |
| delta_Rv0954 | 1.539 | -1.001 |
| PonA1 | 1.304 | -0.364 |
| EccD1_KO | -0.779 | -0.243 |
| EspI_KO | -0.65 | -0.724 |
| PE35_KO | -0.642 | -0.866 |
| PPE68_KO | -0.729 | -0.147 |
| glycerol2 | -1.799 | -1.892 |
| lignocerate | -1.136 | -0.669 |
| oleate | -1.974 | -2.121 |
| phosphatidylcholine | -0.566 | -0.59 |
| acetate | -0.028 | 0.352 |
| glucAc | -0.327 | 0.227 |
| Rv0950ko | 0.434 | 0.874 |
| Rv1096ko | 0.85 | 0.03 |
| Rv3684ko | 0.029 | -0.707 |
| delta_otsA_trehalose | -0.222 | 2.171 |