Top 10 genes with highest correlation to Rv3305c/amiA1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1664/pks9 | (cc=0.5626) | info on Rv1664/pks9 |
| Rv2190c/- | (cc=0.5293) | info on Rv2190c/- |
| Rv2179c/- | (cc=0.5248) | info on Rv2179c/- |
| Rv2584c/apt | (cc=0.5186) | info on Rv2584c/apt |
| Rv2519/PE26 | (cc=0.5142) | info on Rv2519/PE26 |
| Rv2352c/PPE38 | (cc=0.5087) | info on Rv2352c/PPE38 |
| Rv3864/espE | (cc=0.5063) | info on Rv3864/espE |
| Rv1420/uvrC | (cc=0.4914) | info on Rv1420/uvrC |
| Rv2886c/- | (cc=0.4886) | info on Rv2886c/- |
| Rv3750c/- | (cc=0.4825) | info on Rv3750c/- |
Correlation of Rv3305c/amiA1 with Rv2190c/-
Normalized LFCs for Rv3305c/amiA1:
(description and provenance of datasets)
| Rv3305c/amiA1 | Rv2190c/- | |
| Fe_supp_jason_reseq | -1.711 | 2.516 |
| low_pH_jason_reseq | -2.014 | -0.221 |
| NO_jason_reseq | -0.454 | -3.877 |
| B6_jason_reseq | -1.483 | -0.596 |
| MHCII_jason_reseq | 0.372 | -0.565 |
| Isoniazid02 | -1.007 | 0.563 |
| Rifampicin4 | 0.062 | -3.541 |
| Ethambutol3 | -0.337 | -2.182 |
| Meropenem3 | -1.118 | -0.786 |
| Vancomycin16 | -1.374 | -4.51 |
| Rv2680_day32 | 0.595 | 2.417 |
| H37Rv_KO_MarP | -0.449 | -6.0 |
| hypoxia_3wks | -1.252 | -2.767 |
| hypoxia_6wks | 0.814 | -0.228 |
| glycerol | 2.099 | -0.098 |
| cholesterol | 1.663 | 2.214 |
| AJ | 0.255 | -1.276 |
| Bibs02 | 1.099 | 0.993 |
| Bibs02c | -0.55 | 1.306 |
| BL6 | 0.882 | 3.063 |
| BL6a | 0.0 | 2.749 |
| BXD01 | 1.316 | 2.595 |
| BXD010 | -0.337 | 2.438 |
| BXD011 | 0.226 | 2.323 |
| BXD03 | 0.657 | 2.42 |
| BXD04 | 1.303 | 2.446 |
| BXD05 | 0.78 | 3.337 |
| BXD06 | 0.941 | 3.167 |
| BXD07 | 0.456 | 2.933 |
| BXD08 | 1.626 | 2.286 |
| BXD09 | 0.614 | 3.087 |
| CAST | 0.172 | -1.088 |
| CCcont | 2.22 | 3.364 |
| DS01 | 0.778 | 1.001 |
| DS02 | -0.922 | 0.0 |
| DS04 | 1.036 | 1.359 |
| DS0c | 0.313 | 1.298 |
| GP01 | 0.527 | 1.498 |
| GP02 | -0.705 | -0.128 |
| GP0c | 0.231 | 1.031 |
| NOD | 0.324 | -1.061 |
| NZO | -0.733 | -1.263 |
| PWK | -0.242 | -0.786 |
| H37Rv_KO_CtpC | 0.79 | 2.295 |
| H37Rv_KO_CtpD | 1.37 | 1.805 |
| H37Rv_KO_Rv1272 | 1.885 | 2.512 |
| H37Rv_KO_SugABC | 0.956 | 1.815 |
| H37Rv_KO_MbtN | 0.747 | 4.046 |
| Trans05 | 1.413 | 2.172 |
| macrophage_unactivated | 1.613 | 0.076 |
| IL1 | 0.107 | 0.575 |
| Rapamycin | 0.988 | -0.23 |
| Tcell | 1.323 | -0.329 |
| GMCSF | 1.669 | 0.568 |
| IFNab | -0.112 | 1.103 |
| IFNg | -0.299 | 1.563 |
| IFNg_GMCSF1 | 0.0 | 0.575 |
| Rv1432_day32 | 0.117 | 2.996 |
| Rv1565c_day32 | 1.039 | 0.0 |
| secA2_input | -1.781 | -4.612 |
| delta_Rv3594 | 1.173 | 2.299 |
| delta_Rv3717 | 0.593 | 2.896 |
| delta_Rv3811 | 0.561 | 2.019 |
| delta_Rv0954 | -0.067 | 0.358 |
| PonA1 | 0.085 | -0.825 |
| EccD1_KO | -0.477 | -1.766 |
| EspI_KO | -0.174 | -1.634 |
| PE35_KO | -0.554 | -3.246 |
| PPE68_KO | -1.84 | -1.411 |
| glycerol2 | 0.252 | -0.531 |
| lignocerate | -0.387 | -0.462 |
| oleate | -1.229 | -0.537 |
| phosphatidylcholine | -1.535 | -0.531 |
| acetate | -1.006 | 1.15 |
| glucAc | -1.159 | 0.213 |
| Rv0950ko | -1.155 | -6.0 |
| Rv1096ko | -0.148 | -1.176 |
| Rv3684ko | -1.153 | -0.364 |
| delta_otsA_trehalose | 1.247 | 1.066 |