Top 10 genes with highest correlation to Rv3250c/rubB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1673c/- | (cc=0.3767) | info on Rv1673c/- |
| Rv0889c/citA | (cc=0.3766) | info on Rv0889c/citA |
| Rv1172c/PE12 | (cc=0.3659) | info on Rv1172c/PE12 |
| Rv1765c/- | (cc=0.3616) | info on Rv1765c/- |
| Rv2323c/- | (cc=0.3483) | info on Rv2323c/- |
| Rv0316/- | (cc=0.3478) | info on Rv0316/- |
| Rv3358/relK | (cc=0.343) | info on Rv3358/relK |
| Rv1737c/narK2 | (cc=0.3407) | info on Rv1737c/narK2 |
| Rv2506/- | (cc=0.3382) | info on Rv2506/- |
| Rv2063A/mazF7 | (cc=0.327) | info on Rv2063A/mazF7 |
Correlation of Rv3250c/rubB with Rv1172c/PE12
Normalized LFCs for Rv3250c/rubB:
(description and provenance of datasets)
| Rv3250c/rubB | Rv1172c/PE12 | |
| Fe_supp_jason_reseq | 1.702 | -1.135 |
| low_pH_jason_reseq | -0.724 | -0.873 |
| NO_jason_reseq | 1.218 | -0.323 |
| B6_jason_reseq | -1.59 | 0.023 |
| MHCII_jason_reseq | -0.694 | 0.309 |
| Isoniazid02 | 0.485 | 1.705 |
| Rifampicin4 | -0.742 | -0.669 |
| Ethambutol3 | 0.32 | 1.79 |
| Meropenem3 | -0.777 | -0.187 |
| Vancomycin16 | 0.122 | 0.374 |
| Rv2680_day32 | 1.252 | 0.853 |
| H37Rv_KO_MarP | 0.374 | 0.27 |
| hypoxia_3wks | -0.227 | -0.187 |
| hypoxia_6wks | -0.654 | -0.727 |
| glycerol | 0.029 | 0.544 |
| cholesterol | -1.049 | 0.179 |
| AJ | 1.092 | 1.003 |
| Bibs02 | 0.775 | -0.032 |
| Bibs02c | 0.147 | -0.611 |
| BL6 | -0.206 | 0.212 |
| BL6a | -0.502 | -0.38 |
| BXD01 | 0.326 | 0.747 |
| BXD010 | -1.363 | -0.749 |
| BXD011 | -1.609 | -0.069 |
| BXD03 | -0.712 | 0.024 |
| BXD04 | -0.76 | -0.885 |
| BXD05 | 0.93 | -0.245 |
| BXD06 | -0.467 | -0.161 |
| BXD07 | -0.906 | -0.404 |
| BXD08 | 0.576 | -0.036 |
| BXD09 | -1.238 | -0.184 |
| CAST | 0.098 | -0.062 |
| CCcont | -0.044 | 0.265 |
| DS01 | -0.756 | 0.101 |
| DS02 | -1.018 | 0.148 |
| DS04 | -0.115 | 0.083 |
| DS0c | -0.57 | 0.614 |
| GP01 | 0.483 | -0.3 |
| GP02 | 0.392 | -0.462 |
| GP0c | -0.379 | 0.211 |
| NOD | 1.814 | 2.263 |
| NZO | -0.525 | 0.217 |
| PWK | -0.81 | 0.051 |
| H37Rv_KO_CtpC | 0.398 | 0.794 |
| H37Rv_KO_CtpD | 1.457 | 0.801 |
| H37Rv_KO_Rv1272 | -2.703 | 0.073 |
| H37Rv_KO_SugABC | -1.733 | -0.726 |
| H37Rv_KO_MbtN | -0.242 | 0.559 |
| Trans05 | -0.457 | 0.011 |
| macrophage_unactivated | -1.597 | 0.047 |
| IL1 | -1.145 | -1.216 |
| Rapamycin | -2.197 | -1.132 |
| Tcell | -0.209 | -0.205 |
| GMCSF | 0.161 | 0.0 |
| IFNab | -0.789 | -0.71 |
| IFNg | -1.304 | -0.214 |
| IFNg_GMCSF1 | -0.16 | 1.04 |
| Rv1432_day32 | 0.164 | 0.326 |
| Rv1565c_day32 | -0.033 | 0.278 |
| secA2_input | 0.102 | -0.189 |
| delta_Rv3594 | -0.012 | 0.996 |
| delta_Rv3717 | 0.293 | 0.559 |
| delta_Rv3811 | -1.001 | 1.398 |
| delta_Rv0954 | 0.423 | 0.827 |
| PonA1 | -0.067 | 1.275 |
| EccD1_KO | -1.431 | 0.171 |
| EspI_KO | 0.02 | -0.727 |
| PE35_KO | 0.149 | 0.032 |
| PPE68_KO | 0.797 | -0.278 |
| glycerol2 | -0.053 | 0.296 |
| lignocerate | -0.136 | 0.712 |
| oleate | -1.328 | 0.086 |
| phosphatidylcholine | -0.826 | 0.563 |
| acetate | -0.336 | 0.48 |
| glucAc | -0.051 | 0.681 |
| Rv0950ko | -0.271 | 0.422 |
| Rv1096ko | -0.066 | -0.296 |
| Rv3684ko | -1.67 | -0.586 |
| delta_otsA_trehalose | -0.101 | 0.536 |