TnSeqCorr

Top 10 genes with highest correlation to Rv3162c/-:

update plotcorrelationlink to info on gene
Rv0968/- (cc=0.5573) info on Rv0968/-
Rv3566c/nat (cc=0.5406) info on Rv3566c/nat
Rv2313c/- (cc=0.5117) info on Rv2313c/-
Rv2066/cobI (cc=0.51) info on Rv2066/cobI
Rv2322c/rocD1 (cc=0.5047) info on Rv2322c/rocD1
Rv1997/ctpF (cc=0.4969) info on Rv1997/ctpF
Rv0342/iniA (cc=0.4851) info on Rv0342/iniA
Rv0925c/- (cc=0.4821) info on Rv0925c/-
Rv3191c/- (cc=0.4711) info on Rv3191c/-
Rv3233c/- (cc=0.4645) info on Rv3233c/-

Correlation of Rv3162c/- with Rv3191c/-

Normalized LFCs for Rv3162c/-:
(description and provenance of datasets)
Rv3162c/-Rv3191c/-
Fe_supp_jason_reseq

-0.226

-0.024

low_pH_jason_reseq

-0.803

-0.37

NO_jason_reseq

-0.971

-0.06

B6_jason_reseq

-0.461

0.47

MHCII_jason_reseq

0.937

0.448

Isoniazid02

-3.406

-1.929

Rifampicin4

0.26

0.625

Ethambutol3

-2.873

-2.151

Meropenem3

-1.185

-0.361

Vancomycin16

-1.271

-0.907

Rv2680_day32

1.982

0.071

H37Rv_KO_MarP

0.882

0.409

hypoxia_3wks

-1.116

-0.395

hypoxia_6wks

-2.318

-0.683

glycerol

-0.252

-0.176

cholesterol

-0.131

-0.111

AJ

0.215

0.424

Bibs02

-0.906

0.283

Bibs02c

0.491

0.57

BL6

-1.419

-0.065

BL6a

-0.96

0.716

BXD01

-1.792

-0.167

BXD010

-2.305

0.178

BXD011

-0.726

0.436

BXD03

-1.018

0.247

BXD04

-1.594

0.221

BXD05

-2.741

0.692

BXD06

-1.288

0.452

BXD07

-0.841

0.158

BXD08

-0.799

0.253

BXD09

-0.999

0.623

CAST

-0.132

0.439

CCcont

-1.124

0.151

DS01

-0.25

0.862

DS02

0.153

0.285

DS04

-0.571

1.062

DS0c

-0.212

0.292

GP01

-0.987

0.304

GP02

-0.733

-0.484

GP0c

-1.739

-0.684

NOD

0.085

0.539

NZO

-0.689

0.585

PWK

-0.041

0.624

H37Rv_KO_CtpC

-0.348

0.291

H37Rv_KO_CtpD

-0.883

0.08

H37Rv_KO_Rv1272

0.812

0.547

H37Rv_KO_SugABC

0.424

0.526

H37Rv_KO_MbtN

-1.021

0.429

Trans05

0.424

0.094

macrophage_unactivated

-0.442

-0.174

IL1

0.475

-0.047

Rapamycin

-1.139

-0.169

Tcell

-0.544

-0.606

GMCSF

-0.37

0.013

IFNab

0.0

0.287

IFNg

-0.233

0.102

IFNg_GMCSF1

1.109

0.33

Rv1432_day32

0.177

0.316

Rv1565c_day32

0.0

-0.591

secA2_input

-0.335

-0.632

delta_Rv3594

-1.36

-0.08

delta_Rv3717

-0.943

-0.216

delta_Rv3811

-1.039

0.025

delta_Rv0954

-2.12

-0.26

PonA1

0.204

0.123

EccD1_KO

0.217

-0.217

EspI_KO

-0.707

0.371

PE35_KO

0.263

0.082

PPE68_KO

-0.666

-0.189

glycerol2

-0.455

-0.113

lignocerate

0.388

0.516

oleate

-1.326

-0.413

phosphatidylcholine

-0.115

0.084

acetate

-0.407

0.57

glucAc

-0.013

0.485

Rv0950ko

0.992

0.109

Rv1096ko

-0.739

0.38

Rv3684ko

1.307

0.301

delta_otsA_trehalose

0.445

-0.138