Top 10 genes with highest correlation to Rv3120/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2296/- | (cc=0.5317) | info on Rv2296/- |
| Rv2307D/- | (cc=0.53) | info on Rv2307D/- |
| Rv2652c/- | (cc=0.506) | info on Rv2652c/- |
| Rv3571/kshB | (cc=0.4919) | info on Rv3571/kshB |
| Rv0916c/PE7 | (cc=0.4913) | info on Rv0916c/PE7 |
| Rv1704c/cycA | (cc=0.4592) | info on Rv1704c/cycA |
| Rv2087/- | (cc=0.4568) | info on Rv2087/- |
| Rv3478/PPE60 | (cc=0.4502) | info on Rv3478/PPE60 |
| Rv1074c/fadA3 | (cc=0.4497) | info on Rv1074c/fadA3 |
| Rv0843/- | (cc=0.437) | info on Rv0843/- |
Correlation of Rv3120/- with Rv3478/PPE60
Normalized LFCs for Rv3120/-:
(description and provenance of datasets)
| Rv3120/- | Rv3478/PPE60 | |
| Fe_supp_jason_reseq | 0.35 | -0.627 |
| low_pH_jason_reseq | -0.885 | -0.31 |
| NO_jason_reseq | -0.772 | -0.509 |
| B6_jason_reseq | -0.851 | -0.499 |
| MHCII_jason_reseq | -0.628 | -0.12 |
| Isoniazid02 | -0.198 | 0.259 |
| Rifampicin4 | 0.311 | 0.301 |
| Ethambutol3 | 0.426 | 0.637 |
| Meropenem3 | -1.405 | -0.805 |
| Vancomycin16 | -0.361 | -0.738 |
| Rv2680_day32 | -0.914 | 1.156 |
| H37Rv_KO_MarP | -0.522 | 0.94 |
| hypoxia_3wks | -0.12 | -0.658 |
| hypoxia_6wks | -0.37 | -0.921 |
| glycerol | -1.673 | -1.76 |
| cholesterol | -1.347 | -1.858 |
| AJ | -0.417 | 0.096 |
| Bibs02 | -0.77 | -0.326 |
| Bibs02c | -0.591 | -0.577 |
| BL6 | -1.771 | -0.581 |
| BL6a | -0.917 | -0.561 |
| BXD01 | -0.495 | -0.462 |
| BXD010 | -1.015 | -0.15 |
| BXD011 | 0.365 | -0.452 |
| BXD03 | -0.117 | -1.083 |
| BXD04 | -1.218 | -0.275 |
| BXD05 | -0.611 | -0.065 |
| BXD06 | -0.487 | -0.698 |
| BXD07 | -0.086 | -0.392 |
| BXD08 | -0.571 | -0.414 |
| BXD09 | -0.725 | -1.048 |
| CAST | -0.384 | 0.048 |
| CCcont | -0.852 | 0.008 |
| DS01 | -0.147 | -0.802 |
| DS02 | -0.599 | -0.011 |
| DS04 | -0.534 | -0.346 |
| DS0c | -0.024 | -0.57 |
| GP01 | -0.546 | 0.232 |
| GP02 | 0.116 | -1.328 |
| GP0c | -0.569 | -1.284 |
| NOD | 1.172 | 0.911 |
| NZO | -0.397 | 0.182 |
| PWK | -0.641 | 0.206 |
| H37Rv_KO_CtpC | -0.324 | -0.472 |
| H37Rv_KO_CtpD | -0.349 | -1.876 |
| H37Rv_KO_Rv1272 | 0.75 | -0.269 |
| H37Rv_KO_SugABC | -0.99 | -0.099 |
| H37Rv_KO_MbtN | -0.306 | -0.243 |
| Trans05 | -0.235 | 0.823 |
| macrophage_unactivated | -0.647 | -1.054 |
| IL1 | -0.314 | -0.243 |
| Rapamycin | 0.374 | -0.252 |
| Tcell | -0.482 | -0.13 |
| GMCSF | -0.953 | -1.302 |
| IFNab | 0.405 | -0.441 |
| IFNg | 1.243 | -0.604 |
| IFNg_GMCSF1 | 0.157 | -0.459 |
| Rv1432_day32 | 0.568 | 2.139 |
| Rv1565c_day32 | 0.188 | 0.055 |
| secA2_input | -0.166 | 0.05 |
| delta_Rv3594 | 1.285 | 0.162 |
| delta_Rv3717 | -0.126 | 0.258 |
| delta_Rv3811 | -0.021 | -0.399 |
| delta_Rv0954 | -0.416 | 0.567 |
| PonA1 | 0.649 | 0.92 |
| EccD1_KO | 1.023 | 0.799 |
| EspI_KO | 0.978 | 0.77 |
| PE35_KO | 1.383 | 1.047 |
| PPE68_KO | 1.728 | 0.893 |
| glycerol2 | 0.338 | -0.517 |
| lignocerate | -0.136 | 0.141 |
| oleate | 0.812 | -0.164 |
| phosphatidylcholine | 0.266 | 1.605 |
| acetate | 0.484 | -0.574 |
| glucAc | 0.036 | -0.595 |
| Rv0950ko | -0.292 | -0.467 |
| Rv1096ko | -0.51 | -0.253 |
| Rv3684ko | -0.318 | -0.478 |
| delta_otsA_trehalose | -0.59 | -1.319 |