Top 10 genes with highest correlation to Rv3120/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2296/- | (cc=0.5317) | info on Rv2296/- |
| Rv2307D/- | (cc=0.53) | info on Rv2307D/- |
| Rv2652c/- | (cc=0.506) | info on Rv2652c/- |
| Rv3571/kshB | (cc=0.4919) | info on Rv3571/kshB |
| Rv0916c/PE7 | (cc=0.4913) | info on Rv0916c/PE7 |
| Rv1704c/cycA | (cc=0.4592) | info on Rv1704c/cycA |
| Rv2087/- | (cc=0.4568) | info on Rv2087/- |
| Rv3478/PPE60 | (cc=0.4502) | info on Rv3478/PPE60 |
| Rv1074c/fadA3 | (cc=0.4497) | info on Rv1074c/fadA3 |
| Rv0843/- | (cc=0.437) | info on Rv0843/- |
Correlation of Rv3120/- with Rv2296/-
Normalized LFCs for Rv3120/-:
(description and provenance of datasets)
| Rv3120/- | Rv2296/- | |
| Fe_supp_jason_reseq | 0.35 | 0.044 |
| low_pH_jason_reseq | -0.885 | -0.146 |
| NO_jason_reseq | -0.772 | 0.192 |
| B6_jason_reseq | -0.851 | -0.606 |
| MHCII_jason_reseq | -0.628 | -0.186 |
| Isoniazid02 | -0.198 | -0.017 |
| Rifampicin4 | 0.311 | 0.152 |
| Ethambutol3 | 0.426 | 0.058 |
| Meropenem3 | -1.405 | -0.133 |
| Vancomycin16 | -0.361 | -0.011 |
| Rv2680_day32 | -0.914 | 0.351 |
| H37Rv_KO_MarP | -0.522 | -0.102 |
| hypoxia_3wks | -0.12 | 0.195 |
| hypoxia_6wks | -0.37 | 0.2 |
| glycerol | -1.673 | 0.0 |
| cholesterol | -1.347 | -0.134 |
| AJ | -0.417 | 0.146 |
| Bibs02 | -0.77 | 0.056 |
| Bibs02c | -0.591 | 0.199 |
| BL6 | -1.771 | -0.164 |
| BL6a | -0.917 | 0.0 |
| BXD01 | -0.495 | 0.284 |
| BXD010 | -1.015 | 0.005 |
| BXD011 | 0.365 | 0.109 |
| BXD03 | -0.117 | -0.926 |
| BXD04 | -1.218 | -0.308 |
| BXD05 | -0.611 | 0.659 |
| BXD06 | -0.487 | 0.018 |
| BXD07 | -0.086 | 0.069 |
| BXD08 | -0.571 | 0.245 |
| BXD09 | -0.725 | -0.019 |
| CAST | -0.384 | 0.077 |
| CCcont | -0.852 | -0.679 |
| DS01 | -0.147 | 0.332 |
| DS02 | -0.599 | -0.496 |
| DS04 | -0.534 | -0.041 |
| DS0c | -0.024 | 0.707 |
| GP01 | -0.546 | -0.326 |
| GP02 | 0.116 | 1.042 |
| GP0c | -0.569 | 0.061 |
| NOD | 1.172 | 0.709 |
| NZO | -0.397 | -0.007 |
| PWK | -0.641 | 0.246 |
| H37Rv_KO_CtpC | -0.324 | -0.194 |
| H37Rv_KO_CtpD | -0.349 | 0.131 |
| H37Rv_KO_Rv1272 | 0.75 | -0.322 |
| H37Rv_KO_SugABC | -0.99 | 0.325 |
| H37Rv_KO_MbtN | -0.306 | -0.014 |
| Trans05 | -0.235 | -0.298 |
| macrophage_unactivated | -0.647 | 0.0 |
| IL1 | -0.314 | -0.528 |
| Rapamycin | 0.374 | -0.074 |
| Tcell | -0.482 | -0.371 |
| GMCSF | -0.953 | -0.18 |
| IFNab | 0.405 | -0.057 |
| IFNg | 1.243 | 0.283 |
| IFNg_GMCSF1 | 0.157 | -0.408 |
| Rv1432_day32 | 0.568 | 0.233 |
| Rv1565c_day32 | 0.188 | 0.287 |
| secA2_input | -0.166 | 0.477 |
| delta_Rv3594 | 1.285 | 0.902 |
| delta_Rv3717 | -0.126 | 0.464 |
| delta_Rv3811 | -0.021 | 0.857 |
| delta_Rv0954 | -0.416 | -0.045 |
| PonA1 | 0.649 | 0.439 |
| EccD1_KO | 1.023 | 1.204 |
| EspI_KO | 0.978 | 0.73 |
| PE35_KO | 1.383 | 1.205 |
| PPE68_KO | 1.728 | 1.353 |
| glycerol2 | 0.338 | 0.601 |
| lignocerate | -0.136 | 0.029 |
| oleate | 0.812 | 1.0 |
| phosphatidylcholine | 0.266 | 0.402 |
| acetate | 0.484 | -0.289 |
| glucAc | 0.036 | -0.705 |
| Rv0950ko | -0.292 | 0.368 |
| Rv1096ko | -0.51 | -0.299 |
| Rv3684ko | -0.318 | -0.373 |
| delta_otsA_trehalose | -0.59 | -1.025 |