TnSeqCorr

Top 10 genes with highest correlation to Rv3091/-:

update plotcorrelationlink to info on gene
Rv0330c/- (cc=0.5366) info on Rv0330c/-
Rv1736c/narX (cc=0.52) info on Rv1736c/narX
Rv2636/- (cc=0.5037) info on Rv2636/-
Rv2848c/cobB (cc=0.4989) info on Rv2848c/cobB
Rv2003c/- (cc=0.4943) info on Rv2003c/-
Rv0441c/- (cc=0.4882) info on Rv0441c/-
Rv3169/- (cc=0.4839) info on Rv3169/-
Rv1838c/vapC13 (cc=0.4833) info on Rv1838c/vapC13
Rv2766c/- (cc=0.4819) info on Rv2766c/-
Rv1999c/- (cc=0.4784) info on Rv1999c/-

Correlation of Rv3091/- with Rv0330c/-

Normalized LFCs for Rv3091/-:
(description and provenance of datasets)
Rv3091/-Rv0330c/-
Fe_supp_jason_reseq

-1.219

-0.589

low_pH_jason_reseq

-0.467

-0.845

NO_jason_reseq

-0.047

0.599

B6_jason_reseq

-0.054

0.089

MHCII_jason_reseq

0.665

-0.109

Isoniazid02

0.178

-1.12

Rifampicin4

-0.406

0.449

Ethambutol3

0.191

0.557

Meropenem3

-0.533

-1.634

Vancomycin16

-0.08

-0.57

Rv2680_day32

0.061

-0.49

H37Rv_KO_MarP

0.09

0.715

hypoxia_3wks

-0.415

0.183

hypoxia_6wks

-0.758

-0.025

glycerol

-0.116

0.404

cholesterol

-0.216

0.161

AJ

0.402

0.686

Bibs02

0.159

0.507

Bibs02c

0.38

0.5

BL6

-0.504

-0.251

BL6a

-0.623

0.0

BXD01

-0.765

-0.411

BXD010

-0.516

-0.53

BXD011

-0.615

-0.385

BXD03

-0.608

-0.052

BXD04

-0.355

-0.48

BXD05

-0.711

-0.584

BXD06

-0.744

-0.246

BXD07

-0.796

-0.331

BXD08

-0.096

-0.648

BXD09

-0.552

-0.425

CAST

-0.527

-0.097

CCcont

-0.771

-0.41

DS01

0.183

0.864

DS02

0.377

0.55

DS04

0.512

-0.706

DS0c

-0.534

0.519

GP01

0.566

0.228

GP02

-0.02

-0.206

GP0c

0.105

-0.045

NOD

-0.291

0.462

NZO

-0.627

-0.24

PWK

-0.112

-0.183

H37Rv_KO_CtpC

-1.014

-0.639

H37Rv_KO_CtpD

-0.557

-0.57

H37Rv_KO_Rv1272

-0.129

-0.059

H37Rv_KO_SugABC

-0.57

-0.38

H37Rv_KO_MbtN

-1.173

-1.578

Trans05

0.226

0.637

macrophage_unactivated

-0.581

0.344

IL1

0.433

0.578

Rapamycin

0.792

1.043

Tcell

-0.482

-0.244

GMCSF

0.417

0.966

IFNab

0.408

0.438

IFNg

0.588

0.676

IFNg_GMCSF1

0.273

0.688

Rv1432_day32

-0.009

0.02

Rv1565c_day32

0.6

1.057

secA2_input

0.341

1.14

delta_Rv3594

-0.089

0.213

delta_Rv3717

-0.04

-0.204

delta_Rv3811

-0.793

-0.141

delta_Rv0954

-0.509

0.162

PonA1

-0.418

0.87

EccD1_KO

0.056

0.668

EspI_KO

0.214

-0.376

PE35_KO

0.265

-0.242

PPE68_KO

0.467

-0.352

glycerol2

0.07

-0.233

lignocerate

0.329

0.09

oleate

-0.013

-0.282

phosphatidylcholine

0.427

-0.118

acetate

-0.071

-0.515

glucAc

-0.09

-0.226

Rv0950ko

0.127

0.35

Rv1096ko

0.666

1.025

Rv3684ko

0.0

0.966

delta_otsA_trehalose

0.276

0.664